prot_H-elongata_contig52173.12509.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52173.12509.1
Unique Nameprot_H-elongata_contig52173.12509.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
[Close]
BLAST of mRNA_H-elongata_contig52173.12509.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.070e-15
Identity = 51/146 (34.93%), Postives = 68/146 (46.58%), Query Frame = 0 
Query:    1 LTANATVIIRLSVRAGALTQPLPASTVESGQAVSFDGVIAFARI--------------------------YPRFQSASCGHLR-------------------------------LLKLVRVMGTYCRPRFEVAGSAIIDLGNVGHT 89
            L A AT ++RL +R G LT PLP + VE+G+AV FDG++AFARI                          +   ++A  G  R                               L+KL+R +GT+CRPRFEV G+  +DLGNVGHT
Sbjct: 1636 LPARATAVVRLCIRTGELTAPLPTAAVENGKAVGFDGIVAFARIGGDCASSVVAANGTSAAARAGLYEQQFGERRAAVPGDTRALLLPERVYCSGSGATTGEEDNPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHT 1781
[Close]
BLAST of mRNA_H-elongata_contig52173.12509.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.080e-15
Identity = 52/147 (35.37%), Postives = 68/147 (46.26%), Query Frame = 0 
Query:    1 LTANATVIIRLSVRAGALTQPLPASTVESGQAVSFDGVIAFARI--------------------------YPRFQSASCGHLR--------------------------------LLKLVRVMGTYCRPRFEVAGSAIIDLGNVGHT 89
            L A AT ++RL +R G LT PLP + VESG+AV FDG++AFARI                          +   ++A  G  R                                L+KL+R +GT+CRPRFEV G+  +DLGNVGHT
Sbjct: 3368 LPARATAVVRLCIRTGELTAPLPTAAVESGKAVDFDGIVAFARIGGACASSVAVGNATAAAARAGLYEQQFGGRRAAVPGDTRALFLPERVYCCGSGATTDGEEDDPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHT 3514
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52173.12509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE5.070e-1534.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI5.080e-1535.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52173contigH-elongata_contig52173:2667..3026 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52173.12509.1mRNA_H-elongata_contig52173.12509.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52173 2667..3026 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52173.12509.1 ID=prot_H-elongata_contig52173.12509.1|Name=mRNA_H-elongata_contig52173.12509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
LTANATVIIRLSVRAGALTQPLPASTVESGQAVSFDGVIAFARIYPRFQS
ASCGHLRLLKLVRVMGTYCRPRFEVAGSAIIDLGNVGHTV
back to top