prot_H-elongata_contig52049.12489.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52049.12489.1
Unique Nameprot_H-elongata_contig52049.12489.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
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BLAST of mRNA_H-elongata_contig52049.12489.1 vs. uniprot
Match: A0A5D3DSP6_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DSP6_CUCME)

HSP 1 Score: 50.4 bits (119), Expect = 2.820e-5
Identity = 33/84 (39.29%), Postives = 43/84 (51.19%), Query Frame = 0 
Query:    3 PWILDSGATGHFTHDGSRLSGYAECRRVLRGAGSETFPIVGTASLTLCVRSGGGMVRV----ELNDVAHVPGLSHHLLPLRRIT 82
            PWILDSGAT HFT        Y  C      AG+E   I   A  +L   +G G + +     L +V HVP LS++LL + +IT
Sbjct:  261 PWILDSGATDHFTSFSEHFVTYTSC------AGNEKIQI---ADGSLAPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKIT 335
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BLAST of mRNA_H-elongata_contig52049.12489.1 vs. uniprot
Match: A0A2I0W5Q7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W5Q7_9ASPA)

HSP 1 Score: 49.7 bits (117), Expect = 5.340e-5
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 0 
Query:    4 WILDSGATGHFTHDGSRL---SGYAECRRVLRGAGSETFPIVGTASLTLCVRSGGGMVRVELNDVAHVPGLSHHLLPLRRIT 82
            W+LD+GAT H THDGS L   S Y     V    GS T PI  T    L +       ++ LN++ HVP L+H+LL + ++T
Sbjct:  334 WVLDTGATSHLTHDGSYLHSPSTYQGNDSVSVANGS-TVPIQHTGQGLLPLPETSR--KLYLNNLLHVPSLTHNLLSVSKLT 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52049.12489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5D3DSP6_CUCME2.820e-539.29Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
A0A2I0W5Q7_9ASPA5.340e-540.24Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52049contigH-elongata_contig52049:3519..3764 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52049.12489.1mRNA_H-elongata_contig52049.12489.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52049 3519..3764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52049.12489.1 ID=prot_H-elongata_contig52049.12489.1|Name=mRNA_H-elongata_contig52049.12489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
EVPWILDSGATGHFTHDGSRLSGYAECRRVLRGAGSETFPIVGTASLTLC
VRSGGGMVRVELNDVAHVPGLSHHLLPLRRIT
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