prot_H-elongata_contig52034.12488.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52034.12488.1
Unique Nameprot_H-elongata_contig52034.12488.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length275
Homology
BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: A0A6H5JG98_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.830e-85
Identity = 158/238 (66.39%), Postives = 186/238 (78.15%), Query Frame = 0
Query:    1 MLIVGGVLSATTTVLVVAAAVASWAARKALLR----SPGRGKIRAKLTRGEKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQA-VWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQVLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMATRVHAAEVQYRALLLKHDRLM--LEGVDRVDGG 231
            MLIV GVLS  T  LVV AAVAS AAR ALL     SP R + + KL+RGE+L   WALALA TSTF+DGSFAV SAWLARDGEQA VWL+A W  MGRGD RYV+GDTFIV++AII+A ++GPGA+LYAW+VYCRKGYRFSVGIL+CAAS+ TQ+LRY T A   +S++  GSKA F+ ASV+LALL+VAGAL VL++N+ RM  RVHAAEV YRALLL+H RL   +E     DGG
Sbjct:  675 MLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVISAWLARDGEQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEVHYRALLLEHGRLSDKVETRHEGDGG 912          
BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 6.510e-79
Identity = 145/212 (68.40%), Postives = 171/212 (80.66%), Query Frame = 0
Query:    1 MLIVGGVLSATTTVLVVAAAVASWAARKALLR----SPGRGKIRAKLTRGEKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQA-VWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQVLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMATRVHAAE 207
            MLIV GVLS  T  LVV AAVAS AAR ALL     SP R + + KL+RGE+L   WALALA TSTF+DGSFAVFSAWLARDGEQA VWL+A W  MGRGD RYV+GDTFIV++AII+A ++GPGA+LYAW+VYCRKGYRFSVGIL+CAAS+ TQ+LRY T A   +S++  GSKA F+ ASV+LALL+VAGAL VL++N+ RM  RVHAAE
Sbjct:  814 MLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVFSAWLARDGEQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAE 1025          
BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: A0A812WIG6_SYMMI (Ebp protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WIG6_SYMMI)

HSP 1 Score: 88.2 bits (217), Expect = 1.860e-16
Identity = 44/162 (27.16%), Postives = 92/162 (56.79%), Query Frame = 0
Query:   43 LTRGEKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQAVWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQVLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMATRVH 204
            +T  +KL+  W++ +     +L+G++A+F+  +      + W ++ W+ MG+ D+RY   D F+V+S  I+A V+GP  L+YAWS+   + +R   GI++ +  + TQVL +A +        S  +  +F +  ++  +LR+   ++++ + +R + + VH
Sbjct:  131 VTMSDKLILVWSILMGLFHIYLNGTYAMFAYRIVDSESSSAWFISLWQHMGKYDTRYTTADDFLVSSNGIMATVVGPLLLVYAWSIVSGRSFRQVCGIVVNSVEIYTQVLYFAIEMQNRFENISVKNPTMFTLVFILYNMLRLIVPIMIVCHEVRTVVSIVH 292          
BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: A0A7S3M4F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4F2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.980e-8
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   47 EKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQAVWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYR 135
            ++ +  W +     + F++GS AVF+        +  W+ A    +GR DSR++E D FI +S  ILAA++GP  L YAW+ +    YR
Sbjct:  171 DRFLIAWGIFGGLFNIFVNGSLAVFARHADESQLKGSWMFALLNYLGRADSRFIESDPFIRSSMTILAAIVGPLMLFYAWTTFVYAPYR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JG98_9PHAE1.830e-8566.39CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LG14_ECTSI6.510e-7968.40CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A812WIG6_SYMMI1.860e-1627.16Ebp protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A7S3M4F2_9STRA1.980e-834.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007905Emopamil-binding proteinPFAMPF05241EBPcoord: 42..161
e-value: 5.2E-15
score: 55.4
IPR007905Emopamil-binding proteinPANTHERPTHR14207STEROL ISOMERASEcoord: 6..200
NoneNo IPR availablePANTHERPTHR14207:SF03-BETA-HYDROXYSTEROID-DELTA(8),DELTA(7)-ISOMERASEcoord: 6..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..151
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 127..132
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 195..274
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 171..194
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 76..104
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..126
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 133..152
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 104..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52034contigH-elongata_contig52034:1338..2162 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52034.12488.1mRNA_H-elongata_contig52034.12488.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52034 1336..3041 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52034.12488.1 ID=prot_H-elongata_contig52034.12488.1|Name=mRNA_H-elongata_contig52034.12488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
MLIVGGVLSATTTVLVVAAAVASWAARKALLRSPGRGKIRAKLTRGEKLV
ACWALALAGTSTFLDGSFAVFSAWLARDGEQAVWLVAFWRAMGRGDSRYV
EGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQ
VLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMA
TRVHAAEVQYRALLLKHDRLMLEGVDRVDGGGGGGGGGWRNKGASVRPTW
TLTGDPGVMGFAGARRPRTPRSPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007905EBP