mRNA_H-elongata_contig52034.12488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52034.12488.1
Unique NamemRNA_H-elongata_contig52034.12488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: A0A6H5JG98_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.140e-81
Identity = 164/272 (60.29%), Postives = 197/272 (72.43%), Query Frame = 3 
Query:    3 MLIVGGVLSATTTVLVVAAAVASWAARKALLR----SPGRGKIRAKLTRGEKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQA-VWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQVLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMATRVHAAEVQYRALLLKHDRLMLEGVDRVDG-GXXXXXXXWRNKGASVRPTWTLTGDPGVMGFAGARR 800
            MLIV GVLS  T  LVV AAVAS AAR ALL     SP R + + KL+RGE+L   WALALA TSTF+DGSFAV SAWLARDGEQA VWL+A W  MGRGD RYV+GDTFIV++AII+A ++GPGA+LYAW+VYCRKGYRFSVGIL+CAAS+ TQ+LRY T A   +S++  GSKA F+ ASV+LALL+VAGAL VL++N+ RM  RVHAAEV YRALLL+H RL  +   R +G G         ++G ++R      GD       G RR
Sbjct:  675 MLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVISAWLARDGEQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEVHYRALLLEHGRLSDKVETRHEGDGGEGAVGGPEHRGGALRKR-KKDGDGTAATLGGTRR 945
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BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 6.260e-75
Identity = 145/212 (68.40%), Postives = 171/212 (80.66%), Query Frame = 3 
Query:    3 MLIVGGVLSATTTVLVVAAAVASWAARKALLR----SPGRGKIRAKLTRGEKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQA-VWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQVLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMATRVHAAE 623
            MLIV GVLS  T  LVV AAVAS AAR ALL     SP R + + KL+RGE+L   WALALA TSTF+DGSFAVFSAWLARDGEQA VWL+A W  MGRGD RYV+GDTFIV++AII+A ++GPGA+LYAW+VYCRKGYRFSVGIL+CAAS+ TQ+LRY T A   +S++  GSKA F+ ASV+LALL+VAGAL VL++N+ RM  RVHAAE
Sbjct:  814 MLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVFSAWLARDGEQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAE 1025
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BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: A0A812WIG6_SYMMI (Ebp protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WIG6_SYMMI)

HSP 1 Score: 88.2 bits (217), Expect = 2.880e-15
Identity = 44/162 (27.16%), Postives = 92/162 (56.79%), Query Frame = 3 
Query:  129 LTRGEKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQAVWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQVLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMATRVH 614
            +T  +KL+  W++ +     +L+G++A+F+  +      + W ++ W+ MG+ D+RY   D F+V+S  I+A V+GP  L+YAWS+   + +R   GI++ +  + TQVL +A +        S  +  +F +  ++  +LR+   ++++ + +R + + VH
Sbjct:  131 VTMSDKLILVWSILMGLFHIYLNGTYAMFAYRIVDSESSSAWFISLWQHMGKYDTRYTTADDFLVSSNGIMATVVGPLLLVYAWSIVSGRSFRQVCGIVVNSVEIYTQVLYFAIEMQNRFENISVKNPTMFTLVFILYNMLRLIVPIMIVCHEVRTVVSIVH 292
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BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Match: A0A7S3M4F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4F2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.990e-8
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 3 
Query:  141 EKLVACWALALAGTSTFLDGSFAVFSAWLARDGEQAVWLVAFWRAMGRGDSRYVEGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYR 407
            ++ +  W +     + F++GS AVF+        +  W+ A    +GR DSR++E D FI +S  ILAA++GP  L YAW+ +    YR
Sbjct:  171 DRFLIAWGIFGGLFNIFVNGSLAVFARHADESQLKGSWMFALLNYLGRADSRFIESDPFIRSSMTILAAIVGPLMLFYAWTTFVYAPYR 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52034.12488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JG98_9PHAE1.140e-8160.29CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LG14_ECTSI6.260e-7568.40CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A812WIG6_SYMMI2.880e-1527.16Ebp protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A7S3M4F2_9STRA8.990e-834.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52034contigH-elongata_contig52034:1336..3041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue4.6e-69
Seed eggNOG ortholog2880.D8LG14
KEGG koko:K19996
EggNOG free text desc.cholestenol delta-isomerase activity
EggNOG OGsKOG1471@1,KOG1471@2759,KOG4826@1,KOG4826@2759
Ec32 ortholog descriptionCRAL-TRIO domain protein
Ec32 orthologEc-21_004980.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal peptide
Exons1
Model size1706
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52034.12488.1prot_H-elongata_contig52034.12488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52034 1338..2162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.8032951-UTR-H-elongata_contig52034:1335..13371622930850.8032951-UTR-H-elongata_contig52034:1335..1337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52034 1336..1337 +
1691679597.3174903-UTR-H-elongata_contig52034:1335..13371691679597.3174903-UTR-H-elongata_contig52034:1335..1337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52034 1336..1337 +
1622930850.8347914-UTR-H-elongata_contig52034:2162..30411622930850.8347914-UTR-H-elongata_contig52034:2162..3041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52034 2163..3041 +
1691679597.340548-UTR-H-elongata_contig52034:2162..30411691679597.340548-UTR-H-elongata_contig52034:2162..3041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52034 2163..3041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.817745-CDS-H-elongata_contig52034:1337..21621622930850.817745-CDS-H-elongata_contig52034:1337..2162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52034 1338..2162 +
1691679597.3285186-CDS-H-elongata_contig52034:1337..21621691679597.3285186-CDS-H-elongata_contig52034:1337..2162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52034 1338..2162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52034.12488.1

>prot_H-elongata_contig52034.12488.1 ID=prot_H-elongata_contig52034.12488.1|Name=mRNA_H-elongata_contig52034.12488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
MLIVGGVLSATTTVLVVAAAVASWAARKALLRSPGRGKIRAKLTRGEKLV
ACWALALAGTSTFLDGSFAVFSAWLARDGEQAVWLVAFWRAMGRGDSRYV
EGDTFIVASAIILAAVIGPGALLYAWSVYCRKGYRFSVGILICAASVQTQ
VLRYATQAGWGDSTSSSGSKAVFVVASVILALLRVAGALVVLVYNIRRMA
TRVHAAEVQYRALLLKHDRLMLEGVDRVDGGGGGGGGGWRNKGASVRPTW
TLTGDPGVMGFAGARRPRTPRSPR*
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mRNA from alignment at H-elongata_contig52034:1336..3041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52034.12488.1 ID=mRNA_H-elongata_contig52034.12488.1|Name=mRNA_H-elongata_contig52034.12488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1706bp|location=Sequence derived from alignment at H-elongata_contig52034:1336..3041+ (Himanthalia elongata Himel1 dioecious)
CCATGCTGATCGTTGGAGGTGTACTGAGCGCCACGACCACGGTGCTGGTC
GTGGCGGCGGCGGTGGCGTCTTGGGCTGCGCGGAAGGCGCTCCTGAGATC
ACCGGGAAGAGGAAAGATAAGAGCGAAGCTGACGCGGGGAGAGAAACTGG
TGGCTTGCTGGGCTCTGGCCCTCGCGGGAACCTCGACATTTCTCGATGGA
AGCTTCGCGGTGTTCAGCGCGTGGTTAGCGAGGGACGGGGAGCAGGCGGT
GTGGCTCGTGGCGTTTTGGAGGGCGATGGGAAGGGGAGACAGTCGTTATG
TGGAAGGTGACACTTTTATTGTCGCGAGCGCGATTATCTTGGCGGCTGTC
ATCGGACCCGGAGCCCTATTATACGCGTGGTCGGTATACTGTCGCAAGGG
GTACCGATTCTCCGTGGGGATACTGATCTGCGCGGCCTCGGTACAGACGC
AGGTCCTCCGATACGCGACGCAGGCGGGATGGGGAGATTCCACCTCTTCT
TCCGGCAGCAAGGCGGTGTTCGTAGTAGCCAGCGTAATCCTGGCGCTTCT
TCGGGTGGCCGGCGCTCTCGTAGTCCTGGTGTACAACATCCGGCGGATGG
CGACGAGGGTGCACGCGGCCGAGGTACAATACAGAGCCTTGCTACTCAAG
CACGATCGCCTCATGCTGGAAGGGGTCGACAGGGTTGACGGCGGCGGCGG
CGGCGGCGGCGGCGGCTGGAGGAACAAAGGCGCCAGCGTTCGTCCAACGT
GGACTCTTACCGGAGATCCCGGCGTGATGGGCTTCGCCGGCGCTCGCAGG
CCTCGCACGCCTCGGTCGCCACGATGATGACAGCGTGTTTCAGGCGGGGC
TCTTATCATTTGGGGAAAGTCTTCAGGTCCCGTACGGTGTAAGGTGGCAT
GTACGAAATGGTTTGGTACCGATGATAATAGGAATAGGACAGGCTAGACC
TGTTTGCTGTGGATATTTGTGGAGGCAAGGTGCTTTGCCCTCGCTCGTAG
TCAGCTGCAGCTGCAACGTCGGGAGTACGGCTGTGAATTTCGAACGCCGT
GTGAAATAGGGGGACGAGGGTTGCGTCCTTCGTCGACTGTGACTGGTGGG
CATACATCGCGGGCATATTTTCTAACGTTTTGCCCCCTCTTTGGAGAGGG
GTCCTGGAGAATATCCGCTCGAAGAGTACAAAATGTTAGGCACACCCCCT
CGAGAAGGATGGATAAGAGTTTCTATACATAATAAGTGGTGGACAATTTC
CGCGACGAGTCAAACGCTTTAAGGGAAAGCTGTCTCGAAAATTATTCGTC
CTCTTGCCGCTGAAGGCCAACTTTAGCAAAATACATAGTGAGTCATTAGG
GTATTAAATAGGGCATATATAGATAAAAAAATATTAGGTCGTCGGCGCAG
CGCTTGCCCGTGTGGTCGTTGTGAGAGGGTTCGTCAACCCATCAAGCTTT
GATACGCGTGCGCCTATTTGTTTTACTCGCTGTGGCAAATGCCGGCTGAT
TGTGCGTTGTGTTCTTCACCAGGGTTCTGTTTTTACTTCGATACCCCCAC
ACGTTCGTCTGGCGCTTTGGTCGATCCGCCGCGGAATCGGCTCTCTGCCC
CTAGGTAGTTCTGTCGAAATATATCTTAAGATAGGGTAGATTGGTTAGGG
TGTTGTTGCTGCTTGAAAATCATACTAATCATACTATCATACTATAACAG
TCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig52034:1336..3041+

>mRNA_H-elongata_contig52034.12488.1 ID=mRNA_H-elongata_contig52034.12488.1|Name=mRNA_H-elongata_contig52034.12488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig52034:1336..3041+ (Himanthalia elongata Himel1 dioecious)
ATGCTGATCGTTGGAGGTGTACTGAGCGCCACGACCACGGTGCTGGTCGT
GGCGGCGGCGGTGGCGTCTTGGGCTGCGCGGAAGGCGCTCCTGAGATCAC
CGGGAAGAGGAAAGATAAGAGCGAAGCTGACGCGGGGAGAGAAACTGGTG
GCTTGCTGGGCTCTGGCCCTCGCGGGAACCTCGACATTTCTCGATGGAAG
CTTCGCGGTGTTCAGCGCGTGGTTAGCGAGGGACGGGGAGCAGGCGGTGT
GGCTCGTGGCGTTTTGGAGGGCGATGGGAAGGGGAGACAGTCGTTATGTG
GAAGGTGACACTTTTATTGTCGCGAGCGCGATTATCTTGGCGGCTGTCAT
CGGACCCGGAGCCCTATTATACGCGTGGTCGGTATACTGTCGCAAGGGGT
ACCGATTCTCCGTGGGGATACTGATCTGCGCGGCCTCGGTACAGACGCAG
GTCCTCCGATACGCGACGCAGGCGGGATGGGGAGATTCCACCTCTTCTTC
CGGCAGCAAGGCGGTGTTCGTAGTAGCCAGCGTAATCCTGGCGCTTCTTC
GGGTGGCCGGCGCTCTCGTAGTCCTGGTGTACAACATCCGGCGGATGGCG
ACGAGGGTGCACGCGGCCGAGGTACAATACAGAGCCTTGCTACTCAAGCA
CGATCGCCTCATGCTGGAAGGGGTCGACAGGGTTGACGGCGGCGGCGGCG
GCGGCGGCGGCGGCTGGAGGAACAAAGGCGCCAGCGTTCGTCCAACGTGG
ACTCTTACCGGAGATCCCGGCGTGATGGGCTTCGCCGGCGCTCGCAGGCC
TCGCACGCCTCGGTCGCCACGATGAATGCTGATCGTTGGAGGTGTACTGA
GCGCCACGACCACGGTGCTGGTCGTGGCGGCGGCGGTGGCGTCTTGGGCT
GCGCGGAAGGCGCTCCTGAGATCACCGGGAAGAGGAAAGATAAGAGCGAA
GCTGACGCGGGGAGAGAAACTGGTGGCTTGCTGGGCTCTGGCCCTCGCGG
GAACCTCGACATTTCTCGATGGAAGCTTCGCGGTGTTCAGCGCGTGGTTA
GCGAGGGACGGGGAGCAGGCGGTGTGGCTCGTGGCGTTTTGGAGGGCGAT
GGGAAGGGGAGACAGTCGTTATGTGGAAGGTGACACTTTTATTGTCGCGA
GCGCGATTATCTTGGCGGCTGTCATCGGACCCGGAGCCCTATTATACGCG
TGGTCGGTATACTGTCGCAAGGGGTACCGATTCTCCGTGGGGATACTGAT
CTGCGCGGCCTCGGTACAGACGCAGGTCCTCCGATACGCGACGCAGGCGG
GATGGGGAGATTCCACCTCTTCTTCCGGCAGCAAGGCGGTGTTCGTAGTA
GCCAGCGTAATCCTGGCGCTTCTTCGGGTGGCCGGCGCTCTCGTAGTCCT
GGTGTACAACATCCGGCGGATGGCGACGAGGGTGCACGCGGCCGAGGTAC
AATACAGAGCCTTGCTACTCAAGCACGATCGCCTCATGCTGGAAGGGGTC
GACAGGGTTGACGGCGGCGGCGGCGGCGGCGGCGGCGGCTGGAGGAACAA
AGGCGCCAGCGTTCGTCCAACGTGGACTCTTACCGGAGATCCCGGCGTGA
TGGGCTTCGCCGGCGCTCGCAGGCCTCGCACGCCTCGGTCGCCACGATGA
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