prot_H-elongata_contig52030.12487.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52030.12487.1
Unique Nameprot_H-elongata_contig52030.12487.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length47
Homology
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BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Match: A0A6H5JV33_9PHAE (SURF1-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV33_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.370e-13
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0 
Query:    5 VGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLPEGPQG 46
            VGATACLGTWQAMRY+WKL+L+E+  AKM  EPVDLPEG +G
Sbjct:   95 VGATACLGTWQAMRYSWKLDLIESRRAKMELEPVDLPEGLEG 136
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BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Match: D7G7I7_ECTSI (SURF1-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.710e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 
Query:    5 VGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLPEGPQG 46
            VGATACLGTWQAMRY+WKL+L+E+  A+M  EPVDLPEG +G
Sbjct:   95 VGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEG 136
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BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Match: A0A835ZFZ9_9STRA (SURF1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.150e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:    5 VGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLP 41
            VG+T  LGTWQA RY WK++L+E S  +++SEP DLP
Sbjct:   53 VGSTVGLGTWQAFRYQWKVDLVEQSQKQLSSEPTDLP 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JV33_9PHAE1.370e-1376.19SURF1-like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7G7I7_ECTSI3.710e-1373.81SURF1-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835ZFZ9_9STRA5.150e-759.46SURF1-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002994Surfeit locus 1/Shy1PFAMPF02104SURF1coord: 6..42
e-value: 1.1E-7
score: 32.3
IPR002994Surfeit locus 1/Shy1PROSITEPS50895SURF1coord: 1..46
score: 10.579

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52030contigH-elongata_contig52030:87..227 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52030.12487.1mRNA_H-elongata_contig52030.12487.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52030 87..227 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52030.12487.1 ID=prot_H-elongata_contig52030.12487.1|Name=mRNA_H-elongata_contig52030.12487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MYFQVGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLPEGPQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002994Surf1/Shy1