prot_H-elongata_contig5199.12480.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5199.12480.1
Unique Nameprot_H-elongata_contig5199.12480.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length311
Homology
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BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot
Match: D8LFC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFC2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 9.400e-68
Identity = 145/293 (49.49%), Postives = 191/293 (65.19%), Query Frame = 0 
Query:    1 MVDAEEFSRNENVFKQVALQEAEERHLRDEEFAKLRREWLEQMKLKAYKKQNDKEENRSGVNCDACGTSSLQKMVGEDPDKAARTLRQRQQMLAWLEQHSRELRNRKESEEADMASYWAYLQRVNDKQAELSEEDQAARKTLNFTIKEENRRMAAERAENMARWKEKEEEANAEELRFGERFLXXXXXXXXXXXSSCRGFKERFTRKQKAEL---LQSNVDMCAESLRKAEREREDEAEWYLHQASREKTRAAMEQRDLQEHRQAKDAEVKLLRQLQEQELQTQERDLRARNS 290
            M   EEF RNENV+K VA QEAEER LRD+E  ++R EWLEQMK K  K+Q +K+   +GV+ D CG S++Q M GEDPD+ +RT +Q+ QM AW  Q + E   R++  + +MA YWAYL+RV+ +Q ELSEE++AARKTL   IK+ENRR A ERAE MAR K+ E++ANA+ELR+    L           SS     +  +RKQKAEL    QSN DM A  LRKAE+ERE+EA W++ Q   EK R AMEQ D +E ++ K+ E +        +L  Q+R++R R S
Sbjct:   64 MASKEEFDRNENVYKHVAAQEAEERRLRDQELERMRLEWLEQMKFKYDKEQREKDMIHAGVDFDKCGLSAVQTMGGEDPDRLSRTAQQQAQMRAWSTQLANERLEREKLADQEMADYWAYLERVSQRQGELSEEEEAARKTLILQIKDENRRRALERAEEMARQKDLEDQANADELRYRNELLREDEGEG----SSTNNLFKGLSRKQKAELQQDTQSNADMRAARLRKAEQEREEEAAWFMQQ---EKMRVAMEQADREERQRVKELEEERXXXXXXXQLDLQQRNMRERCS 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFC2_ECTSI9.400e-6849.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..113
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availableCOILSCoilCoilcoord: 210..230
NoneNo IPR availableCOILSCoilCoilcoord: 256..279
NoneNo IPR availablePANTHERPTHR14517:SF6coord: 4..310
IPR008805RIB43APFAMPF05914RIB43Acoord: 15..285
e-value: 3.7E-15
score: 55.6
IPR008805RIB43APANTHERPTHR14517RIB43A-RELATEDcoord: 4..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5199contigH-elongata_contig5199:1266..6207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5199.12480.1mRNA_H-elongata_contig5199.12480.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5199 1266..6210 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5199.12480.1 ID=prot_H-elongata_contig5199.12480.1|Name=mRNA_H-elongata_contig5199.12480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=311bp
MVDAEEFSRNENVFKQVALQEAEERHLRDEEFAKLRREWLEQMKLKAYKK
QNDKEENRSGVNCDACGTSSLQKMVGEDPDKAARTLRQRQQMLAWLEQHS
RELRNRKESEEADMASYWAYLQRVNDKQAELSEEDQAARKTLNFTIKEEN
RRMAAERAENMARWKEKEEEANAEELRFGERFLREKEEDEEGNASSCRGF
KERFTRKQKAELLQSNVDMCAESLRKAEREREDEAEWYLHQASREKTRAA
MEQRDLQEHRQAKDAEVKLLRQLQEQELQTQERDLRARNSRFGEIDYTRG
IYAGFGKSCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008805RIB43A