prot_H-elongata_contig5178.12452.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5178.12452.1
Unique Nameprot_H-elongata_contig5178.12452.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length640
Homology
BLAST of mRNA_H-elongata_contig5178.12452.1 vs. uniprot
Match: A0A6H5LNC5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNC5_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 7.900e-58
Identity = 158/338 (46.75%), Postives = 194/338 (57.40%), Query Frame = 0
Query:    4 EDWESDSEDGAAGVKYAAVGQTAASPRSPSASKEMMHRARVEAREAVDIGEEEAFRAWLAKLRAVQEIPIGHVEKCSRALAVTLGTSPADGSVRSSLQALLVAETLRGGGSEEVARFVRSVAGIIADAASRACPLEMQPPPPRDPRAVASPSSAGAGKTVRDCGGVVGDGPCGDPSERDDKSCVGGTSCAKA-SLDPSVIAIRDMEGVAAYAHALAHVARSASKQRRAWKKQASHVTAGVVLQN----------NNQRGKKGKRGATLTSGHTKI--KAHVHGLPSSPSKLRPPPVVVGNLPGSFPFSRSTDSLLMHARAMVGLKRAHRWAKAWLALP 328
            E W+ D    AA     A   +AA P  P  + + + RARV A EAVD+GE+ AFR WL +LR +Q+IP+GHVEKCSR+LAV LGTSP DGSVR+S++ALLVAETLRGG S EVA FVRS+AG++ADAAS+A P +     P     V  PS   +    R   G   D  C D  + D K       CA   + DP+ ++IRD EG AAYAHAL ++ARS                                 ++++GKK K+ A     H +    A V  LPSS     PPP VVGNL G +PFSRS DSLLMHA+ MVGLKRAHRW  AWL  P
Sbjct: 1142 ETWQGDGS--AARSPVGAASASAAIPTKPPRAPKEVRRARVYAGEAVDLGEDAAFRKWLGRLRVIQDIPVGHVEKCSRSLAVLLGTSPPDGSVRASVRALLVAETLRGGASHEVATFVRSLAGLMADAASKASPPKSAASTPTVGNPVI-PSGGDSHDNARFSPGK--DQVCVDTLDLDAKK----RHCAVGDNTDPAAVSIRDKEGAAAYAHALTYLARSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKKGKKTKKAAWAMRRHLEAVETAQVVVLPSS---QEPPPAVVGNLLGGYPFSRSGDSLLMHAKTMVGLKRAHRWVTAWLNAP 1467          
BLAST of mRNA_H-elongata_contig5178.12452.1 vs. uniprot
Match: D7G7M9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M9_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 9.200e-35
Identity = 100/198 (50.51%), Postives = 127/198 (64.14%), Query Frame = 0
Query:   22 VGQTAAS---PRSPSASKEMMHRARVEAREAVDIGEEEAFRAWLAKLRAVQEIPIGHVEKCSRALAVTLGTSPADGSVRSSLQALLVAETLRGGGSEEVARFVRSVAGIIADAASRACPLEMQPPPPRDPRAVASPSSAGAGKTVRDCGGVVG-DGPCGDPSERDDKSCVGGTSCAKASLDPSVIAIRDMEGVAAYAH 215
            VG  +AS   P  P  +   + RARV+A EAVD+GE+ AFR WL +LRA+Q+IP+GHVEKCS +LAV LGTSP DGSVR+S++ALLVAETLRGG S EVA FVRS+AG++ADAAS+A P +     P     V +P     G +  +     G D  C D  + D K    G      + DP+ ++IRD EG AAYAH
Sbjct:  654 VGAASASAEIPTKPPRALREVRRARVDAGEAVDLGEDAAFRKWLGRLRAIQDIPVGHVEKCSGSLAVLLGTSPPDGSVRASVRALLVAETLRGGASHEVATFVRSLAGLMADAASKASPSKSAASTPT----VGNPVIPSGGDSHDNAQFSPGKDEVCVDTLDLDAKK---GHCAVGDNTDPAAVSIRDKEGAAAYAH 844          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5178.12452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LNC5_9PHAE7.900e-5846.75JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G7M9_ECTSI9.200e-3550.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5178contigH-elongata_contig5178:5101..8034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5178.12452.1mRNA_H-elongata_contig5178.12452.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5178 4477..9019 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5178.12452.1 ID=prot_H-elongata_contig5178.12452.1|Name=mRNA_H-elongata_contig5178.12452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=640bp
MEEEDWESDSEDGAAGVKYAAVGQTAASPRSPSASKEMMHRARVEAREAV
DIGEEEAFRAWLAKLRAVQEIPIGHVEKCSRALAVTLGTSPADGSVRSSL
QALLVAETLRGGGSEEVARFVRSVAGIIADAASRACPLEMQPPPPRDPRA
VASPSSAGAGKTVRDCGGVVGDGPCGDPSERDDKSCVGGTSCAKASLDPS
VIAIRDMEGVAAYAHALAHVARSASKQRRAWKKQASHVTAGVVLQNNNQR
GKKGKRGATLTSGHTKIKAHVHGLPSSPSKLRPPPVVVGNLPGSFPFSRS
TDSLLMHARAMVGLKRAHRWAKAWLALPEGSSLTRVSSETTFAQASIGSA
PTAAFAPEVLVKAVGENPLLPAACFSRHPHGTEENSPHVEDATRAAFAPA
AAVAATGAHQESVSGSSSQVEHATYQISTPIPIQSSRESFTPQWSPTTAT
VPAPLSTPWNPVAAAPSATTAMASVPGGGIPKPPMAASSPVMPSLANGYS
PLLAPWGVNMSSMIASVFSMSTLGAGGDPANPAAATAAWQFPTPQAEVTV
PPITWGLYPLLNPGSYGFNFGGVPSLPGMSAPLVTPAAISSPSENDTADG
GVDLLERWGREGAGGGRAEGRIGDTASDGEDEDLVVVDV*
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