prot_H-elongata_contig5178.12451.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5178.12451.1
Unique Nameprot_H-elongata_contig5178.12451.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length150
Homology
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BLAST of mRNA_H-elongata_contig5178.12451.1 vs. uniprot
Match: A0A6H5LNC5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNC5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.220e-5
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0 
Query:    8 WP-KENTAECPRCGVWGHTACLEYVLPPQFVAP 39
            WP +E+ A CPRCGVWGH  CLEYV+P Q+  P
Sbjct:  369 WPDEEDIAPCPRCGVWGHKTCLEYVVPLQYAIP 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5178.12451.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LNC5_9PHAE1.220e-563.64JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5178contigH-elongata_contig5178:2293..2742 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5178.12451.1mRNA_H-elongata_contig5178.12451.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5178 2293..2743 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5178.12451.1 ID=prot_H-elongata_contig5178.12451.1|Name=mRNA_H-elongata_contig5178.12451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
GKASSSPWPKENTAECPRCGVWGHTACLEYVLPPQFVAPVEASAKAGGSR
SRSSSSRASRGRVKGGRKFKGATQKEGVVRSPKNVAQEGDIAVYTTAAAT
AVPPTPLLSRAVCWRCAQEKAEIAAASRESGMMSGACGVGGGGTAAVAVP
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