mRNA_H-elongata_contig5178.12451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5178.12451.1
Unique NamemRNA_H-elongata_contig5178.12451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5178.12451.1 vs. uniprot
Match: A0A6H5LNC5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNC5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.220e-5
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   22 WP-KENTAECPRCGVWGHTACLEYVLPPQFVAP 117
            WP +E+ A CPRCGVWGH  CLEYV+P Q+  P
Sbjct:  369 WPDEEDIAPCPRCGVWGHKTCLEYVVPLQYAIP 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5178.12451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LNC5_9PHAE1.220e-563.64JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5178contigH-elongata_contig5178:2293..2743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.6491587-CDS-H-elongata_contig5178:2292..27421622930846.6491587-CDS-H-elongata_contig5178:2292..2742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5178 2293..2742 +
1691679595.6332343-CDS-H-elongata_contig5178:2292..27421691679595.6332343-CDS-H-elongata_contig5178:2292..2742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5178 2293..2742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5178.12451.1prot_H-elongata_contig5178.12451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5178 2293..2742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5178.12451.1

>prot_H-elongata_contig5178.12451.1 ID=prot_H-elongata_contig5178.12451.1|Name=mRNA_H-elongata_contig5178.12451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
GKASSSPWPKENTAECPRCGVWGHTACLEYVLPPQFVAPVEASAKAGGSR
SRSSSSRASRGRVKGGRKFKGATQKEGVVRSPKNVAQEGDIAVYTTAAAT
AVPPTPLLSRAVCWRCAQEKAEIAAASRESGMMSGACGVGGGGTAAVAVP
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mRNA from alignment at H-elongata_contig5178:2293..2743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5178.12451.1 ID=mRNA_H-elongata_contig5178.12451.1|Name=mRNA_H-elongata_contig5178.12451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=451bp|location=Sequence derived from alignment at H-elongata_contig5178:2293..2743+ (Himanthalia elongata Himel1 dioecious)
GGCAAAGCGTCCTCATCTCCATGGCCTAAGGAGAACACCGCGGAGTGTCC
CCGGTGCGGCGTGTGGGGCCACACCGCATGCCTAGAGTACGTACTCCCTC
CCCAATTCGTTGCCCCGGTGGAGGCATCAGCGAAGGCAGGTGGGAGCAGA
AGCAGAAGCAGCTCGTCGAGGGCTAGCAGGGGGCGCGTCAAGGGGGGTCG
GAAGTTCAAAGGGGCCACCCAGAAAGAGGGCGTGGTTCGGTCTCCGAAAA
ACGTGGCTCAGGAGGGCGATATCGCCGTATATACTACCGCTGCTGCTACT
GCCGTTCCGCCAACACCACTGCTTTCTCGGGCGGTGTGCTGGCGGTGTGC
CCAGGAAAAGGCGGAGATAGCGGCTGCTTCTCGGGAGAGCGGTATGATGT
CCGGGGCGTGTGGCGTTGGAGGCGGGGGAACGGCGGCCGTGGCGGTCCCT
C
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Coding sequence (CDS) from alignment at H-elongata_contig5178:2293..2743+

>mRNA_H-elongata_contig5178.12451.1 ID=mRNA_H-elongata_contig5178.12451.1|Name=mRNA_H-elongata_contig5178.12451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig5178:2293..2743+ (Himanthalia elongata Himel1 dioecious)
GGCAAAGCGTCCTCATCTCCATGGCCTAAGGAGAACACCGCGGAGTGTCC
CCGGTGCGGCGTGTGGGGCCACACCGCATGCCTAGAGTACGTACTCCCTC
CCCAATTCGTTGCCCCGGTGGAGGCATCAGCGAAGGCAGGTGGGAGCAGA
AGCAGAAGCAGCTCGTCGAGGGCTAGCAGGGGGCGCGTCAAGGGGGGTCG
GAAGTTCAAAGGGGCCACCCAGAAAGAGGGCGTGGTTCGGTCTCCGAAAA
ACGTGGCTCAGGAGGGCGATATCGCCGTATATACTACCGCTGCTGCTACT
GCCGTTCCGCCAACACCACTGCTTTCTCGGGCGGTGTGCTGGCGGTGTGC
CCAGGAAAAGGCGGAGATAGCGGCTGCTTCTCGGGAGAGCGGTATGATGT
CCGGGGCGTGTGGCGTTGGAGGCGGGGGAACGGCGGCCGTGGCGGTCCCT
GGCAAAGCGTCCTCATCTCCATGGCCTAAGGAGAACACCGCGGAGTGTCC
CCGGTGCGGCGTGTGGGGCCACACCGCATGCCTAGAGTACGTACTCCCTC
CCCAATTCGTTGCCCCGGTGGAGGCATCAGCGAAGGCAGGTGGGAGCAGA
AGCAGAAGCAGCTCGTCGAGGGCTAGCAGGGGGCGCGTCAAGGGGGGTCG
GAAGTTCAAAGGGGCCACCCAGAAAGAGGGCGTGGTTCGGTCTCCGAAAA
ACGTGGCTCAGGAGGGCGATATCGCCGTATATACTACCGCTGCTGCTACT
GCCGTTCCGCCAACACCACTGCTTTCTCGGGCGGTGTGCTGGCGGTGTGC
CCAGGAAAAGGCGGAGATAGCGGCTGCTTCTCGGGAGAGCGGTATGATGT
CCGGGGCGTGTGGCGTTGGAGGCGGGGGAACGGCGGCCGTGGCGGTCCCT
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