prot_H-elongata_contig51672.12441.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51672.12441.1
Unique Nameprot_H-elongata_contig51672.12441.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length320
Homology
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.820e-64
Identity = 124/217 (57.14%), Postives = 138/217 (63.59%), Query Frame = 0
Query:   10 QVTLPNKPPPQPDSSACWGYLRLALRPLDSRLLNNALRTPENEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENP-VPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRG-------SDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMARGRSGNAAGYVR 218
            QV+LP KPPPQPD S  W YLRLALRPLDS  L + L TPE      G +PFLANPLSPHVVM+T  NA DTLCC+KPTRDG QVAAGFTDR+VRAWRTAP+AP+P  ADE   VPA                                                 + +R VGHS+PVY VSWSPDGRFLLSAGGDGGVRLWD+ARGR G++AGYVR
Sbjct:  245 QVSLPLKPPPQPDPSENWPYLRLALRPLDSAQLKDTLSTPEG-----GARPFLANPLSPHVVMVTFFNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLSDTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGSSAGYVR 456          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 5.060e-43
Identity = 138/257 (53.70%), Postives = 151/257 (58.75%), Query Frame = 0
Query:   11 VTLPNKPPPQPDSSACWGYLRLALRPLDSRLLNNALRTPENEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPE----EPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMARGRSGNAAGYVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDHPQPLRMFAG 263
            V+LP KPPPQPD    W YLRLALRPLDS  L + L TPE      G +PFLANPLSPHVVM+T  NA DTLCC+KPTRDG                                                          M R+GA           +    + +R VGHS+PVY VSWSPDGRFLLSAGGDGGVRLWD+ARGR G +AG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTD   PLR+FAG
Sbjct:  326 VSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEG-----GARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDG----------------------------------------------------------MQRNGAAXXXXXXXXXQDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDCASPLRIFAG 519          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A835YMV1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.020e-17
Identity = 76/264 (28.79%), Postives = 100/264 (37.88%), Query Frame = 0
Query:   22 DSSACWGYLR-LALRPLDSRLLNNALRTPENEGKLPG-TKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMA--------RGRSGN----AAGYVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDHPQPLRMFAGHLKGVICV 271
            DS     YLR + L+PLD R    +      +   P      LA+ L P V+M T IN   +L CV    D  +VAAGF D   R +R+ P                                                G  GS +   P+R VGH++P+Y++SW+PD RFLL+ GGDG VRLWD+         R   G+    A   +                                 STD PQPLR+F GH+  V  V
Sbjct:  320 DSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQ----------------------------------------------QGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAV 537          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A4T0X3H0_9ASCO (LisH domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X3H0_9ASCO)

HSP 1 Score: 65.5 bits (158), Expect = 4.560e-8
Identity = 47/148 (31.76%), Postives = 67/148 (45.27%), Query Frame = 0
Query:   57 GTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMR-FVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLW 203
            G K F++ P  P V M T  N  + L  ++   D T +A GF D  ++ W          + D +P+            +S+ K +  +S             K  SD P    R  VGHS PVY +S+SPDG++LLS+  D  VRLW
Sbjct:  421 GHKVFISQPALPSVCMYTFHNTNNDLTSLEFHPDSTMIAGGFQDSFIKLW----------SIDGSPL------------KSIIKSDPYNS-------------KVDSDLPTNTSRKLVGHSGPVYGLSFSPDGKYLLSSSADSTVRLW 533          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: G8BGA3_CANPC (LisH domain-containing protein n=3 Tax=Candida TaxID=1535326 RepID=G8BGA3_CANPC)

HSP 1 Score: 63.2 bits (152), Expect = 2.510e-7
Identity = 41/139 (29.50%), Postives = 58/139 (41.73%), Query Frame = 0
Query:   67 SPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 205
            +P V M T  N  + + CV    D T VAAGF    VR W          + D  P+            ES  KK+                 ++    PE   + +GHS P+Y +S+SPD +FLL+   D  +RLW +
Sbjct:  432 APSVCMYTFHNTNNEMTCVAFNEDSTLVAAGFQGSYVRIW----------SLDGKPL------------ESSLKKD-----------------RKNHQLPENSRKLIGHSGPIYGISFSPDNKFLLTCSEDKTIRLWSL 531          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A099P2A2_PICKU (LisH domain-containing protein n=4 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P2A2_PICKU)

HSP 1 Score: 62.8 bits (151), Expect = 3.510e-7
Identity = 47/150 (31.33%), Postives = 67/150 (44.67%), Query Frame = 0
Query:   61 FLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVND----GKRGSDAPEEPMR-FVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 205
            +++ P  P V M T  N  + L  ++   D T +A GF D  ++ W          + D +P+             SV K +         RD  +ND    G   S  P    R  VGHS PVY +S+SPDG++LLS+  D  VRLW +
Sbjct:  480 YISQPSLPSVCMYTFHNTNNDLTSLEYHPDSTMIAGGFQDSFIKLW----------SIDGSPL------------RSVLKNDP------YNRDIDLNDDNDNGGANSGIPNILSRKLVGHSGPVYGLSFSPDGKYLLSSSADSTVRLWSL 601          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A150GP73_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GP73_GONPE)

HSP 1 Score: 60.5 bits (145), Expect = 2.220e-6
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0
Query:  166 PEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMARGR 209
            P  P   VGH  PV AV+WSPDGR +  AGGDG VRLW+ A GR
Sbjct: 1121 PLGPPPLVGHMGPVNAVAWSPDGRLIAGAGGDGTVRLWEAATGR 1164          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A0E9NFN2_SAICN (LisH domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NFN2_SAICN)

HSP 1 Score: 59.7 bits (143), Expect = 3.170e-6
Identity = 46/141 (32.62%), Postives = 59/141 (41.84%), Query Frame = 0
Query:   68 PHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPM---RFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 205
            P V + T  N  D L CV  + D + VA GF +  VR W                           +GE    K +G+ A            K G   PE+ +   R +GHS PVY VS+SPD ++LLS   D  VRLW M
Sbjct:  317 PSVCIYTFHNTYDGLNCVDFSEDASLVAGGFGESYVRVWSL-------------------------KGE----KLVGAQA------------KYGGQHPEDGLSTRRMIGHSGPVYGVSFSPDSKYLLSCSEDKSVRLWSM 416          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A7S4JJI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JJI4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.680e-6
Identity = 42/127 (33.07%), Postives = 49/127 (38.58%), Query Frame = 0
Query:   90 DGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMR--------FVGHSR--PVYAVSWSPDGRFLLSAGGDGGVRLWDMA 206
            DG +VAAG  D  VR W                                    +GS  S   R  +   GK   D    P R         +GH    PV+ V+W+ DGR LLSAGGDG VRLWD A
Sbjct:  563 DGRRVAAGCDDAAVRIWT-----------------------------------LGSGGSGSHRSSSFRSGKASVDTAASPARPAEESAQVLLGHKNGFPVFDVNWNRDGRTLLSAGGDGSVRLWDTA 654          
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A1E3NEA8_9ASCO (LisH domain-containing protein n=2 Tax=Pichia membranifaciens TaxID=4926 RepID=A0A1E3NEA8_9ASCO)

HSP 1 Score: 58.9 bits (141), Expect = 6.330e-6
Identity = 51/169 (30.18%), Postives = 73/169 (43.20%), Query Frame = 0
Query:   37 LDSRLLNNALRTPENEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 205
            L+S   NNA     N G   G   +++ P  P V M T  N  + L  +    D T +A GF D  V+ W          + D +P+             SV K +  +    +  D   N G   + +     + VGHS PVY +S+SPDG +LLS+  D  VRLW +
Sbjct:  465 LNSTSANNA-----NGG---GRTTYISQPSLPSVCMYTFHNTNNDLTNLAFHPDSTMIAGGFQDSFVKLW----------SIDGSPL------------RSVLKNDPYN----IEVDNESNQGLPTNTS----RKLVGHSGPVYGLSFSPDGHYLLSSSADSTVRLWAL 595          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH71_9PHAE2.820e-6457.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXT3_ECTSI5.060e-4353.70TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A835YMV1_9STRA2.020e-1728.79WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A4T0X3H0_9ASCO4.560e-831.76LisH domain-containing protein n=1 Tax=[Candida] i... [more]
G8BGA3_CANPC2.510e-729.50LisH domain-containing protein n=3 Tax=Candida Tax... [more]
A0A099P2A2_PICKU3.510e-731.33LisH domain-containing protein n=4 Tax=Pichia kudr... [more]
A0A150GP73_GONPE2.220e-661.36Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A0E9NFN2_SAICN3.170e-632.62LisH domain-containing protein n=2 Tax=Saitoella c... [more]
A0A7S4JJI4_9STRA5.680e-633.07Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E3NEA8_9ASCO6.330e-630.18LisH domain-containing protein n=2 Tax=Pichia memb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 280..294
score: 37.13
coord: 238..252
score: 31.61
coord: 191..205
score: 37.27
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 165..204
e-value: 3.3E-10
score: 49.9
coord: 212..251
e-value: 5.3E-5
score: 32.6
coord: 68..107
e-value: 6.8
score: 11.8
coord: 254..293
e-value: 5.2E-12
score: 55.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 256..293
e-value: 6.2E-11
score: 42.7
coord: 219..251
e-value: 0.018
score: 15.9
coord: 172..204
e-value: 5.3E-8
score: 33.4
coord: 297..319
e-value: 0.017
score: 15.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 219..260
score: 11.411
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 172..213
score: 17.192
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 261..302
score: 18.429
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 214..320
e-value: 2.7E-36
score: 126.9
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 59..320
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 191..205
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 280..294
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 172..320
score: 39.39
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 68..318

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51672contigH-elongata_contig51672:679..3713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51672.12441.1mRNA_H-elongata_contig51672.12441.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51672 679..3713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51672.12441.1 ID=prot_H-elongata_contig51672.12441.1|Name=mRNA_H-elongata_contig51672.12441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
MHIFGRDLAQVTLPNKPPPQPDSSACWGYLRLALRPLDSRLLNNALRTPE
NEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTD
RVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAM
VRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGV
RLWDMARGRSGNAAGYVRYNGHRGPAWDVSFGPMGYYFATASADGTACMW
STDHPQPLRMFAGHLKGVICVVFHPNGNYVVTGSADKTVRVWDVQTGNCV
RLLVGHACCVNCVAVSPDGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf