prot_H-elongata_contig51600.12429.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51600.12429.1
Unique Nameprot_H-elongata_contig51600.12429.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length129
Homology
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: Q153Y7_CYNCS (Polyprotein (Fragment) n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=Q153Y7_CYNCS)

HSP 1 Score: 64.7 bits (156), Expect = 1.190e-9
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 0
Query:    7 ELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKMFDVKKGSKIPAT--SGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTATMTRPHIASGVGALTRLCETLGR 123
            +L   F++KD+  AR   G  I+R+ KAR LT+ Q   VE ++K F++  G+K   T  +   KLS    P + EE++   ++ Y  AVG LM+    TRP +A  V  ++R     GR
Sbjct:  106 QLNTEFEMKDLGKARKIFGIEISRDRKARTLTLSQRSYVEKVLKRFNMY-GAKTVNTPIAAHFKLSACQCPDSNEEKEYMSRVPYSSAVGSLMYAMICTRPDLAYAVSMVSRYMANPGR 223          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A060S5X4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S5X4_PYCCI)

HSP 1 Score: 60.5 bits (145), Expect = 4.410e-8
Identity = 36/123 (29.27%), Postives = 63/123 (51.22%), Query Frame = 0
Query:    4 FVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKMFDVKKGSKIPAT---SGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTATMTRPHIASGVGALTRLCETLGR 123
            F + +  RF++ D+   R  +G  + R+ +AR + I Q   ++++   F+++  + +       GVL  S++  P  P +      +SYREAVG LM+    TRP IA  V  L++  +  GR
Sbjct:  510 FKSAISARFEMSDLGAMRWILGIEVQRDRQARMIAISQRTYIDTVAVRFNLETANPVSTPLQPGGVLNCSQS--PSTPHQVADMSNVSYREAVGSLMYAVMGTRPDIAFAVTTLSQFMQNPGR 630          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 5.670e-8
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 0
Query:    1 MDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKMFDVKKGSKI--PATSGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTATMTRPHIASGVGALTRLCETLG 122
            +D     +  RF++K++   +  +G  I  +   R L+I+Q   V+++V+ F+ +    +  P     LKLSKAD PR+ +++ +  K  YR  +G L + A  TRP IA  V  L+R  E  G
Sbjct:  202 VDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQS-LKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPG 324          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A6H5IS17_9HYME (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IS17_9HYME)

HSP 1 Score: 50.8 bits (120), Expect = 9.610e-5
Identity = 35/118 (29.66%), Postives = 59/118 (50.00%), Query Frame = 0
Query:    1 MDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKMFDVKKGSKIPATSGVLKLSKADEPRNP--EERKKTRKLSYREAVGVLMWTATMTRPHIASGVGALTR 116
            ++     L + F++K +     Y+G  I RN + R +T+ Q    + +++ F + + SK  +T  V +  K    +    E+  K     Y EA+G LM+ AT+TRP IA  V  L+R
Sbjct:  205 LNEVKTSLCKTFEMKVLGEPNKYLGMEIVRNRRERVMTLTQVEYTKKVLERFKMSE-SKAQSTPMVTRQVKTRNTKQKQIEDEPKPSNAPYGEAIGSLMYLATVTRPDIAFAVIYLSR 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q153Y7_CYNCS1.190e-935.29Polyprotein (Fragment) n=1 Tax=Cynara cardunculus ... [more]
A0A060S5X4_PYCCI4.410e-829.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A8K1CTN1_PYTOL5.670e-831.45Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5IS17_9HYME9.610e-529.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51600contigH-elongata_contig51600:496..882 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51600.12429.1mRNA_H-elongata_contig51600.12429.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51600 266..960 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51600.12429.1 ID=prot_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVK
MFDVKKGSKIPATSGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTA
TMTRPHIASGVGALTRLCETLGRCIKKQ*
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