prot_H-elongata_contig51559.12423.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51559.12423.1
Unique Nameprot_H-elongata_contig51559.12423.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length333
Homology
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BLAST of mRNA_H-elongata_contig51559.12423.1 vs. uniprot
Match: A0A6H5L5W0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.270e-7
Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 0 
Query:    2 EGWGGAF--DRGQRGRARGSAAASGSASWRSQETERLFDDGAWAEVPSSLPHAVDDDHHGDAVPRLAFPGTDNLLSLDLSALAASLRKIPAHERLQLPLAFTANLEPRSD 109
            E WG AF  + G++G   G  A S SA    +ETERL D+  WA   SS   A   +    +   +A PG   LLSL+L  L   LR +PAHERL+LP AFTA LE + +
Sbjct:   60 EKWGRAFGEEHGEQGGGGGRRAISTSAVG-VEETERLLDESEWAIGASSRRLAAPQEDDEPSYGAVAAPG--ELLSLNLEVLEVCLRTLPAHERLRLPHAFTAQLETQGE 166
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BLAST of mRNA_H-elongata_contig51559.12423.1 vs. uniprot
Match: D8LKQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.090e-5
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 
Query:   31 QETERLFDDGAWAEVPSSLPHAV----DDDHHGDAVPRLAFPGTDNLLSLDLSALAASLRKIPAHERLQLPLAFTANLEPRSD 109
            +ETERL D+  WA   SS   A     D+  HG A    A PG   LL+L+L  L   LR +PAHERL+LP A TA LE + D
Sbjct:  141 EETERLLDESEWAIGASSRHLAALQEDDEPSHGAA----AAPG--ELLALNLEVLEVCLRTLPAHERLRLPHALTAQLETQGD 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51559.12423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5W0_9PHAE7.270e-743.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LKQ2_ECTSI2.090e-546.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51559contigH-elongata_contig51559:553..3120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51559.12423.1mRNA_H-elongata_contig51559.12423.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51559 231..3226 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51559.12423.1 ID=prot_H-elongata_contig51559.12423.1|Name=mRNA_H-elongata_contig51559.12423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
MEGWGGAFDRGQRGRARGSAAASGSASWRSQETERLFDDGAWAEVPSSLP
HAVDDDHHGDAVPRLAFPGTDNLLSLDLSALAASLRKIPAHERLQLPLAF
TANLEPRSDSALEPLTFSVEAPMSTSHDRDPRCDTADVDVHKPRVAVPTT
YRPQISGVIDAAERRRRGDVNMAVGESELGGPLAALSGRSGGWEREGSRD
RTAAPVPAASTTMENDGVLDALLGLTVTDAFSAAMAPSDVPGAAGAEASG
GYSRGSIGKNAGIMSGAIYADGEPRSPPMDGLRIEKHSDGSTRLGGIERR
VGARTNASASTGRSAVAANELEEWLDDVLGES*
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