prot_H-elongata_contig51372.12396.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51372.12396.1
Unique Nameprot_H-elongata_contig51372.12396.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length428
Homology
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 8.250e-111
Identity = 256/488 (52.46%), Postives = 283/488 (57.99%), Query Frame = 0
Query:   11 VFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYKGGLSN--------GVGGPTRR-----------------GPAPP---PQSSP------HTCRSVVQHATAVPGIGGEIGLGGNGRWAG-GAP--QGSPLQI--------GADGQPRXXXXXXXXXXXXXXXXXXXXXXXXSNERVFGPATPGS------CAVPG----MTRPLSASSGVFTLPASSK------SESATVLNLE--------RFGGGMPS----------GDPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRGSPLATPETLTNTPPVELSP 419
            VFIRGADRR LQNLRV++R LVYAIGLSPNFAQ +TLKQ EYFGQYGEI KLVINHH+GV  DDPRYGSASAYITFRR+EDAWAA+CSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNP+CLYLHELGDE DRFTKDEVQLGLARHGSSFAFKEEVLGDR          +  P+P NPV PPPC M P    + G           GVGG  +                  GP PP   P S P      H CR+           G E       RWAG GAP   GSPL +        G+D +PR  XXXXXXXXXXXXXXXXXXX    N+   GP  P          VP        P    +  F L A++       S +  V  L          FGG              G+P++  P   Q  Q + G            GSYG  + W KGR SPLATPETL+NTPP+ELSP
Sbjct:   59 VFIRGADRRALQNLRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEVQLGLARHGSSFAFKEEVLGDR--------GNTAAPRPTNPVFPPPCAMLPAPYRREGAGKPQRDGGNMGVGGRQQHQXXXDCEIYRHGNTGGNGPPPPKALPMSLPPSPQVCHPCRTRGGGCCGGAFPGAEAA-----RWAGSGAPLTPGSPLPLDGGGLSLSGSDERPRRRXXXXXXXXXXXXXXXXXXXGH-GNDGCGGPTAPAQQQYGHHAGVPNEYGEQMTPAGQQASHFELTAAAAARAGLGSPTGDVFRLPDHVFDRPFEFGGXXXXXXXXXXXXXXGNPYYPAP---QPAQGFGG------------GSYGSSAGWGKGRNSPLATPETLSNTPPLELSP 517          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 7.340e-103
Identity = 251/509 (49.31%), Postives = 275/509 (54.03%), Query Frame = 0
Query:    8 QPSVFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTK---DEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYK---GGLSNGVGGP-----------------TRRGPAPPPQS--------SPHTCRSVVQHAT-------AVPGIGGEIGLGGNGRWAGG-AP--QGSPLQI--------GADGQPRXXXXXXXXXXXXXXXXXXXXXXXX--------------------------SNE------------RVFGPATPGSCAVPGMTRPLSASSGVFTLPASSKSESATVLNLERFGGGMPSG----------DPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRGSPLATPETLTNTPPVELSP 419
            Q  VFIRGADRR LQNLRV++RTLVYAIGLSPNFAQ +TLKQ EYFGQYGEI KLVINHH+GV  DDPRYGSASAYITFRR+EDAWAA+CSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNP+CLYLHELGDE DRFTK   DEVQLGLARHGSSFAFKEEVLGDR G +  R       +P NPV PPPCPM PP  Y+   GG     GG                  T  G APPP          SPH C                V   GG        RWAGG AP   GSPL +        G+D +PR  XXXXXXXXXX                                      SNE              F      + AVPG     S    VF LP     + A   + E  GGG   G          +P++  P   Q  Q + G            G+YG  + W KGRGS LATPET +NT P+ LSP
Sbjct:   55 QKGVFIRGADRRALQNLRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKAGSDEVQLGLARHGSSFAFKEEVLGDR-GDTAAR-------RPTNPVFPPPCPM-PPAPYRRAGGGKPQRDGGNMGGRYQHRREGELCRHNTAGGNAPPPPKAQPTLLPPSPHDCHPCRTRGXXXXXXXDCVDCFGGAFPGAEAARWAGGGAPLTPGSPLPLDGGSLSLSGSDERPRRRXXXXXXXXXXGATGTPGLVCHGHDACGGGXXXXXXXXXXXXYGHPAGVSNEYGGQRTAAGQQASHFELTAAAARAVPG-----SPPQDVFRLP-----DHAFDCSFEFGGGGRGGGRADDLATVDGNPYYPTP---QPAQDFDG------------GAYGSSAGWGKGRGSSLATPETQSNTSPLNLSP 529          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.660e-55
Identity = 89/128 (69.53%), Postives = 100/128 (78.12%), Query Frame = 0
Query:   24 LRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEV 151
            LRVIQR LVY IGL P    A       YFGQYG I K+V+NHH GV+ DDPR+GSASAY+TF  KEDAW+AI +VDGF L GR +RASFGTTKYCNSFLR L CNN +CLYLHELGDE DRFTK+E+
Sbjct:    1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 198 bits (503), Expect = 4.370e-54
Identity = 106/208 (50.96%), Postives = 137/208 (65.87%), Query Frame = 0
Query:   15 GADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYKGGLSNGVGGPTRRGPA 222
              D+R L N+RVIQR LVY IGL  + A    L++ E+FGQYG I K+V+NH+ G  P DPR+GSASAYITF  K+DA +AI +VDG++  GR IRASFGTTKYCN+FLRNLPC NPECLYLHELGD  DR+T++E+Q G ++  +     + V+G+  GG +  G +       N V PPP     P    G ++   G P  +GPA
Sbjct:  105 SVDKRSLHNVRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEIQTGASKTDAGPFGTQTVVGE--GGPSGTGKKVA-----NSVFPPPV-FDAPKRLPGSVN---GAPGAKGPA 301          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.340e-48
Identity = 99/189 (52.38%), Postives = 126/189 (66.67%), Query Frame = 0
Query:   14 RGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSAS----AYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARH--GSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPP 196
            R  DR+ LQN+RV+QR LVY IG+SP+ A   TL++ EYFGQ+G+I K+V+N +      DPR  SAS    AYITF  KEDA A I +VDGF + GR +RASFGTTKYCNSFLRNL C NP+CLYLHELG+E D FTK+++Q G       S+     +V+   TG   P G+   +    NP++PPP
Sbjct:  144 RVPDRKNLQNIRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQIQSGQNSQFKNSTEVGTTDVVVRVTGNGGPSGTGRRV---TNPIMPPP 329          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A482RNX1_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX1_9ARCH)

HSP 1 Score: 160 bits (406), Expect = 9.170e-44
Identity = 78/165 (47.27%), Postives = 115/165 (69.70%), Query Frame = 0
Query:   17 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGS 181
            DR+ L N RV+QR LVY  GL  +     TL++ EYFGQYG+++K+++  H+  +P    + + SAY+TF  KEDA A I +++GF + G  +RASFGTTKYCN+++R+LPC+NP+C+YLHELG+E DRFTK+E+QLG ++   S    + ++   TG   P G+
Sbjct:   37 DRKHLHNYRVVQRNLVYVTGLPASCGAEDTLRRPEYFGQYGKVSKVIV--HRNAAPP---HHTVSAYVTFCHKEDARACIQALEGFVVEGHVLRASFGTTKYCNNYIRHLPCSNPDCVYLHELGEEEDRFTKEEIQLGSSKLVLSPGRDQTLV---TGSGGPSGT 193          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: H3G5S5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S5_PHYRM)

HSP 1 Score: 162 bits (409), Expect = 9.640e-44
Identity = 81/141 (57.45%), Postives = 100/141 (70.92%), Query Frame = 0
Query:   17 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLAR 157
            +R+ LQN+RV+QR LVY IGL   FA+   L+  E FGQYG+I K V+N    +S D     +ASAYITF  KEDA   I ++DG+ L G  +RASFGTTKYCN FLRN+ CNNP+CLYLHELGD+ D FTK+E+Q G  R
Sbjct:   92 NRKSLQNVRVMQRNLVYVIGLPVRFAEEDILRSNECFGQYGKIVKAVVNKSH-LSADRAN-ATASAYITFANKEDALCCIVAIDGYYLDGSMLRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDDDDSFTKEEMQSGTRR 230          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.720e-43
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 0
Query:   14 RGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDE 142
            R A +  L +L ++QR LVY +GL P  A    +++ E+FGQ+G+I K+V N +QG+ P D R+GSASAYI+F  +EDA A I SVDGF L GRT++A+FGTTKYCNSFLR+LPCNN EC+YLHELGDE
Sbjct:   84 RLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDE 212          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S1C198_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C198_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.760e-43
Identity = 90/186 (48.39%), Postives = 117/186 (62.90%), Query Frame = 0
Query:   17 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGD-----RTGGSNPRGS-RSCLPQPKNPVLPPP 196
            DR  L N+RVI+R LVYA+GL P+ A    L++ E+FGQYG I K+V+N        DPR  SASAY+TF  KEDA A I ++DGF L GR IRAS+GT+KYC++F++N+ CNNPEC YLH +G+  D FTK E+Q G    G     K +  G      R+    P  S ++C+    NPV PPP
Sbjct:  138 DRSQLANMRVIRRNLVYAVGLPPSSASDDMLRRSEHFGQYGRIGKVVLNRSHIGGGGDPRRASASAYVTFVNKEDALACILALDGFYLDGRNIRASYGTSKYCSAFIKNVRCNNPECTYLHHMGEAEDTFTKQEIQAGYVTSGRDVLAKLQAGGGSCIRKRSXXXXPSSSGKACV----NPVFPPP 319          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S2Y5J5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5J5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.280e-42
Identity = 92/222 (41.44%), Postives = 127/222 (57.21%), Query Frame = 0
Query:   17 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSS-FAFKEEVLGD-------------RTGGSNPRG-----SRSCLPQPK--NPVLPPPCPMTPPTAYKGGLSNGVGGPT 217
            DR +L N+RVI+R LVYA+GL P       L++ +YFGQYG+I K+V+N  Q  S  DPR  + SAY+TF  KED  A I ++DGF + GR +RAS+GT+KYC++F++N+ CNNP+C YLHE+G   D FTK E+Q G    G    A +++++ +             R GG  P G     S    P P+   P  P P  + PPT      + G G  T
Sbjct:  118 DRTLLANMRVIRRNLVYAVGLPPTVGSEDNLRRADYFGQYGKIAKIVLNRTQATS-GDPRRATCSAYVTFVHKEDTLACILAMDGFHMDGRNVRASYGTSKYCSAFIKNVRCNNPDCTYLHEMGAAEDTFTKQEIQAGYVTSGRDVLARQQQIVAEQLKQAGSGPAPRKRIGGGGPSGTGKASSHPIFPAPEFDEPTKPSPTLVPPPTGIARASTAGTGNTT 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX15_ECTSI8.250e-11152.46RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE06_9PHAE7.340e-10349.31RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CMF8_9STRA1.660e-5569.53Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4D5P1_HETAK4.370e-5450.96Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2GN38_9STRA1.340e-4852.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482RNX1_9ARCH9.170e-4447.27RRM domain-containing protein (Fragment) n=1 Tax=a... [more]
H3G5S5_PHYRM9.640e-4457.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A835YKN6_9STRA1.720e-4359.69RING/Ubox like zinc-binding domain-containing prot... [more]
A0A7S1C198_9STRA9.760e-4348.39Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2Y5J5_9STRA1.280e-4241.44Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 31..112
e-value: 2.3E-9
score: 47.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 31..113
e-value: 1.8E-20
score: 74.6
NoneNo IPR availablePANTHERPTHR12603:SF0CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4coord: 17..195
IPR039780CCR4-NOT transcription complex subunit 4PANTHERPTHR12603CCR4-NOT TRANSCRIPTION COMPLEX RELATEDcoord: 17..195
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 30..116
score: 10.701
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 32..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51372contigH-elongata_contig51372:1086..3515 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51372.12396.1mRNA_H-elongata_contig51372.12396.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51372 1086..3515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51372.12396.1 ID=prot_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=428bp
QFQQQQQQPSVFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQL
EYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVD
GFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDE
VQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMT
PPTAYKGGLSNGVGGPTRRGPAPPPQSSPHTCRSVVQHATAVPGIGGEIG
LGGNGRWAGGAPQGSPLQIGADGQPRPRRRRGQRGRRGSGGVGVGGGGGN
SNERVFGPATPGSCAVPGMTRPLSASSGVFTLPASSKSESATVLNLERFG
GGMPSGDPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRG
SPLATPETLTNTPPVELSPSGPYSPPPA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039780Mot2
IPR000504RRM_dom
IPR035979RBD_domain_sf