prot_H-elongata_contig5126.12383.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig5126.12383.1
Unique Name	prot_H-elongata_contig5126.12383.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	116

Homology

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A6H5K0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.200e-39
Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 0

Query:    8 ESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQE 115
            E + + WAKQ VGP GANLFVYYLP  L+DA LA AFAPFG+VLSAKVYYDRDTG+SKGFG           FVSY+ PD A+ AI+ MNGF IGQKRLKVVRKRGQ+
Sbjct:  316 EERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFG-----------FVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQ 412

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: D7FV61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV61_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.140e-33
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 0

Query:    8 ESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRL 106
            E + + WAKQ VGP GANLFVYYLP  L+DA LA AFAPFG+VLSAKVYYDRDTG+SKGFG           FVSY+ PD A+ AI+ MNGF IGQK L
Sbjct:  313 EERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFG-----------FVSYSKPDEAEAAISSMNGFFIGQKFL 400

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A8K1CEG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEG0_PYTOL)

HSP 1 Score: 120 bits (302), Expect = 6.720e-30
Identity = 66/115 (57.39%), Postives = 76/115 (66.09%), Query Frame = 0

Query:    2 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            LS V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY  PD AD AIA MNGF IG KRLKV  KR   R
Sbjct:  333 LSGVEAAAKASRTTSQLEGPSGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDSPDAADAAIASMNGFQIGSKRLKVQHKRVHHR 436

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: K3WWH8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWH8_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 1.040e-28
Identity = 65/115 (56.52%), Postives = 75/115 (65.22%), Query Frame = 0

Query:    2 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            L+ VDA +K      Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY   D AD AIA MNGF IG KRLKV  KR  +R
Sbjct:  350 LNGVDAAAKVSRTTSQLEGPAGANLFIYHLPHDLTDADLATAFAPFGSVISAKVYMDKITGESKGFG-----------FVSYDSADAADAAIASMNGFQIGSKRLKVQHKRIHQR 453

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A2D4C1J1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1J1_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 1.680e-28
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 0

Query:    2 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            LS V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY  P+ AD AIA MNGF IG KRLKV  KR   R
Sbjct:  820 LSGVEAANKASRSTSQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDAPEAADAAIASMNGFQIGSKRLKVQHKRVHHR 923

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A2D4C1H5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1H5_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 1.710e-28
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 0

Query:    2 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            LS V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY  P+ AD AIA MNGF IG KRLKV  KR   R
Sbjct: 1263 LSGVEAANKASRSTSQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDAPEAADAAIASMNGFQIGSKRLKVQHKRVHHR 1366

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.600e-28
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 0

Query:   20 GPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKR 112
            GPPGANLF+Y+LP+ LSDA LA AFAPFG VLSAKVY DR +G+SKGFG           FVSY+ P HA+ AIA+MNGF IG KRLKV  KR
Sbjct:  366 GPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFG-----------FVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKR 447

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A662WJB0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJB0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.410e-28
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    5 VDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY   D AD AIA MNGF IG KRLKV  KR  +R
Sbjct:  358 VEAAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDSADAADAAIASMNGFQIGSKRLKVQHKRIHQR 458

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: H3GY92_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GY92_PHYRM)

HSP 1 Score: 115 bits (288), Expect = 6.980e-28
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    5 VDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY   D AD AIA MNGF IG KRLKV  KR  +R
Sbjct:  323 VEAAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDSADAADAAIASMNGFQIGTKRLKVQHKRIHQR 423

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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A3R7A6Y7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A6Y7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.940e-27
Identity = 64/115 (55.65%), Postives = 72/115 (62.61%), Query Frame = 0

Query:    7 AESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYV-----FLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 116
            A S +   A QI GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D++TG+SKGFG S              FVSY     AD AIA MNGF IG KRLKV  KR   R
Sbjct:  208 ASSDAARSAAQIEGPVGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGTSCGGRGTRDECGVAGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKRVHHR 322

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot

BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K0Y1_9PHAE	4.200e-39	68.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FV61_ECTSI	2.140e-33	65.66	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A8K1CEG0_PYTOL	6.720e-30	57.39	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
K3WWH8_GLOUD	1.040e-28	56.52	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A2D4C1J1_PYTIN	1.680e-28	56.52	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
A0A2D4C1H5_PYTIN	1.710e-28	56.52	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
D7FV60_ECTSI	2.600e-28	65.59	Trinucleotide repeat containing 4, isoform CRA_d n...	[more]
A0A662WJB0_9STRA	6.410e-28	56.25	Uncharacterized protein (Fragment) n=2 Tax=Nothoph...	[more]
H3GY92_PHYRM	6.980e-28	56.25	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A3R7A6Y7_9STRA	1.940e-27	55.65	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..109 e-value: 2.0E-13 score: 60.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..68 e-value: 1.1E-7 score: 31.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..113 score: 11.946
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..111 e-value: 3.9E-21 score: 77.3
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 12..114
None	No IPR available	PANTHER	PTHR24012:SF771	RNA-BINDING PROTEIN BRN2	coord: 12..114
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig5126	contig	H-elongata_contig5126:5684..6235 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig5126.12383.1	mRNA_H-elongata_contig5126.12383.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig5126 5684..6235 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig5126.12383.1 ID=prot_H-elongata_contig5126.12383.1|Name=mRNA_H-elongata_contig5126.12383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
DLSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKV
LSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFL
IGQKRLKVVRKRGQER

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf