prot_H-elongata_contig5099.12358.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5099.12358.1
Unique Nameprot_H-elongata_contig5099.12358.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length112
Homology
BLAST of mRNA_H-elongata_contig5099.12358.1 vs. uniprot
Match: B7ZGM8_9PHAE (Thioredoxin-like 5 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.790e-49
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 0
Query:    7 QVVAVWFQASWCRKCKYVGARLRHLDEHLPQHITDNVALVSVDVNKVAEVPQRQKIKDLPTIQFFAGGKQVGSYVATDRGGVLYANLERHFLAAMDGST 105
            QVVAVWFQASWCRKCKY+G+RLR LDEHLP ++T+N+ LVS+DVNKVAEVPQRQKIKDLPTIQFF  GK+VGSYVATD+G   Y+N+ERH  AA + +T
Sbjct:   91 QVVAVWFQASWCRKCKYIGSRLRRLDEHLPAYLTNNLVLVSIDVNKVAEVPQRQKIKDLPTIQFFVEGKEVGSYVATDKGEAFYSNMERHLRAAQEDTT 189          
BLAST of mRNA_H-elongata_contig5099.12358.1 vs. uniprot
Match: A0A6H5KPM9_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPM9_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.560e-43
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 0
Query:    7 QVVAVWFQASWCRKCKYVGARLRHLDEHLPQHITDNVALVSVDVNKVAEVPQRQKIKDLPTIQFFAGGKQVGSYVATDRGGVLYANLERHFLAAM 101
            QVVA+WF ASWCRKCKY+G RL+ LDEHLP ++++N+ +VS+DVN+VA+VPQRQKIKDLPTIQFF  G  VGSYVA DRG   YAN+E+H  AA+
Sbjct:   82 QVVAIWFHASWCRKCKYIGTRLKRLDEHLPAYLSNNLVVVSIDVNQVAQVPQRQKIKDLPTIQFFVDGGMVGSYVANDRGEAFYANMEKHLRAAL 176          
BLAST of mRNA_H-elongata_contig5099.12358.1 vs. uniprot
Match: A0A6T6LFR0_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6LFR0_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 3.230e-10
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 0
Query:    8 VVAVWFQASWCRKCKYVGARLRHLDEHLPQHITDNVALVSVDVNKVAEVPQRQKIKDLPTIQFFAGGK 75
            +VA+ F A+WCRKC ++  ++  L    P     N+    VD+N VAE+P+RQ+I ++PTIQ F  GK
Sbjct:   81 IVAIAFHAAWCRKCIWLIPKIEKLAVEYP-----NILFAKVDINTVAEIPRRQEIHNIPTIQIFQDGK 143          
BLAST of mRNA_H-elongata_contig5099.12358.1 vs. uniprot
Match: UPI001F0E1A90 (thioredoxin n=1 Tax=Wenzhouxiangella sp. XN79A TaxID=2724193 RepID=UPI001F0E1A90)

HSP 1 Score: 51.6 bits (122), Expect = 2.690e-6
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0
Query:    7 QVVAVWFQASWCRKCKYVGARLRHL-DEHLPQHITDNVALVSVDVNKVAEVPQRQKIKDLPTIQFFAGGKQVGSYVATDRGGVLYANLERH 96
            Q V V + A WC  CK +   LR L DE+     +D++ +  V++++  ++  + KI+ +PT+  FAGGK  G  V     GVL   +++H
Sbjct:    5 QPVLVDYWAEWCGPCKMIDPILRELADEY-----SDSLKVAKVNIDENQQIAGQFKIRGIPTLMVFAGGKVQGMKVGAVTKGVLKEFIDQH 90          
BLAST of mRNA_H-elongata_contig5099.12358.1 vs. uniprot
Match: A0A6B0GGF4_9EURY (Thioredoxin n=1 Tax=Halomarina oriensis TaxID=671145 RepID=A0A6B0GGF4_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 2.380e-5
Identity = 27/89 (30.34%), Postives = 46/89 (51.69%), Query Frame = 0
Query:    8 VVAVWFQASWCRKCKYVGARLRHLDEHLPQHITDNVALVSVDVNKVAEVPQRQKIKDLPTIQFFAGGKQVGSYVATDRGGVLYANLERH 96
            +V V + A WC  CK +   ++ L    P        +  VD+++   + Q+Q I+ +PT+Q +AGG+QV   V     G L + +E+H
Sbjct:   48 LVLVDYHAEWCGPCKMLEPTVKTLAADSP------AVVAKVDIDENQSLAQQQGIRGVPTLQLYAGGRQVEEVVGVRDEGSLRSLIEQH 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5099.12358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B7ZGM8_9PHAE5.790e-4974.75Thioredoxin-like 5 n=1 Tax=Laminaria digitata TaxI... [more]
A0A6H5KPM9_9PHAE3.560e-4368.42Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A6T6LFR0_9RHOD3.230e-1042.65Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
UPI001F0E1A902.690e-632.97thioredoxin n=1 Tax=Wenzhouxiangella sp. XN79A Tax... [more]
A0A6B0GGF4_9EURY2.380e-530.34Thioredoxin n=1 Tax=Halomarina oriensis TaxID=6711... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 7..92
e-value: 6.8E-14
score: 51.7
NoneNo IPR availableGENE3D3.40.30.10coord: 2..96
e-value: 2.5E-14
score: 54.9
NoneNo IPR availablePANTHERPTHR10438:SF391THIOREDOXINcoord: 5..82
NoneNo IPR availablePANTHERPTHR10438THIOREDOXINcoord: 5..82
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 5..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5099contigH-elongata_contig5099:1733..2379 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5099.12358.1mRNA_H-elongata_contig5099.12358.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5099 1733..4314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5099.12358.1 ID=prot_H-elongata_contig5099.12358.1|Name=mRNA_H-elongata_contig5099.12358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MLHSTPQVVAVWFQASWCRKCKYVGARLRHLDEHLPQHITDNVALVSVDV
NKVAEVPQRQKIKDLPTIQFFAGGKQVGSYVATDRGGVLYANLERHFLAA
MDGSTSLPGST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf