prot_H-elongata_contig50866.12347.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50866.12347.1
Unique Nameprot_H-elongata_contig50866.12347.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length76
Homology
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BLAST of mRNA_H-elongata_contig50866.12347.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.150e-27
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 0 
Query:    1 EDDPNDAVQAIIRATKARIERNELGSNVVDVDTVTAVVADLTSGEQDLADSSTQIQDAFHRPRLYFDPIRNSLLM 75
            E+  ++AVQAIIR+ KARIERNEL SNVVDVDTV+AVVADLTS EQDLADSSTQ+Q+AF RPRLYFDP+RN+LL+
Sbjct:   33 EEGADEAVQAIIRSVKARIERNELSSNVVDVDTVSAVVADLTSREQDLADSSTQMQNAFVRPRLYFDPVRNTLLL 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50866.12347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD49_ECTSI1.150e-2778.67DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50866contigH-elongata_contig50866:1991..2218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50866.12347.1mRNA_H-elongata_contig50866.12347.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50866 1991..2218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50866.12347.1 ID=prot_H-elongata_contig50866.12347.1|Name=mRNA_H-elongata_contig50866.12347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
EDDPNDAVQAIIRATKARIERNELGSNVVDVDTVTAVVADLTSGEQDLAD
SSTQIQDAFHRPRLYFDPIRNSLLM*
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