mRNA_H-elongata_contig50866.12347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50866.12347.1
Unique NamemRNA_H-elongata_contig50866.12347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50866.12347.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.150e-27
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 EDDPNDAVQAIIRATKARIERNELGSNVVDVDTVTAVVADLTSGEQDLADSSTQIQDAFHRPRLYFDPIRNSLLM 225
            E+  ++AVQAIIR+ KARIERNEL SNVVDVDTV+AVVADLTS EQDLADSSTQ+Q+AF RPRLYFDP+RN+LL+
Sbjct:   33 EEGADEAVQAIIRSVKARIERNELSSNVVDVDTVSAVVADLTSREQDLADSSTQMQNAFVRPRLYFDPVRNTLLL 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50866.12347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD49_ECTSI1.150e-2778.67DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50866contigH-elongata_contig50866:1991..2218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue3.1e-23
Seed eggNOG ortholog2880.D8LD49
Preferred namePOLE2
KEGG rclassRC00005,RC02795
KEGG koko:K02325,ko:K10777
KEGG ReactionR00375,R00376,R00377,R00378,R00381
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03450,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03450,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006301,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019985,GO:0022402,GO:0022414,GO:0031261,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032875,GO:0032877,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045005,GO:0045740,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051302,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097549,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902292,GO:1902315,GO:1902494,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:2000105,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.error-prone translesion synthesis
EggNOG OGsKOG3818@1,KOG3818@2759
EC2.7.7.7,6.5.1.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.0178764-CDS-H-elongata_contig50866:1990..22181622930835.0178764-CDS-H-elongata_contig50866:1990..2218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50866 1991..2218 +
1691679590.734072-CDS-H-elongata_contig50866:1990..22181691679590.734072-CDS-H-elongata_contig50866:1990..2218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50866 1991..2218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50866.12347.1prot_H-elongata_contig50866.12347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50866 1991..2218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50866.12347.1

>prot_H-elongata_contig50866.12347.1 ID=prot_H-elongata_contig50866.12347.1|Name=mRNA_H-elongata_contig50866.12347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
EDDPNDAVQAIIRATKARIERNELGSNVVDVDTVTAVVADLTSGEQDLAD
SSTQIQDAFHRPRLYFDPIRNSLLM*
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mRNA from alignment at H-elongata_contig50866:1991..2218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50866.12347.1 ID=mRNA_H-elongata_contig50866.12347.1|Name=mRNA_H-elongata_contig50866.12347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig50866:1991..2218+ (Himanthalia elongata Himel1 dioecious)
GAGGACGACCCCAATGATGCGGTCCAGGCGATCATTCGCGCCACCAAGGC
CCGCATCGAGCGGAACGAGCTGGGCAGCAATGTGGTGGACGTGGACACTG
TCACCGCTGTCGTGGCAGACCTCACCAGTGGGGAGCAAGATCTCGCCGAC
AGCAGCACGCAGATACAGGACGCTTTCCACCGACCGCGGCTCTACTTCGA
CCCCATCAGGAACTCTCTTTTAATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50866:1991..2218+

>mRNA_H-elongata_contig50866.12347.1 ID=mRNA_H-elongata_contig50866.12347.1|Name=mRNA_H-elongata_contig50866.12347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig50866:1991..2218+ (Himanthalia elongata Himel1 dioecious)
GAGGACGACCCCAATGATGCGGTCCAGGCGATCATTCGCGCCACCAAGGC
CCGCATCGAGCGGAACGAGCTGGGCAGCAATGTGGTGGACGTGGACACTG
TCACCGCTGTCGTGGCAGACCTCACCAGTGGGGAGCAAGATCTCGCCGAC
AGCAGCACGCAGATACAGGACGCTTTCCACCGACCGCGGCTCTACTTCGA
CCCCATCAGGAACTCTCTTTTAATGTGAGAGGACGACCCCAATGATGCGG
TCCAGGCGATCATTCGCGCCACCAAGGCCCGCATCGAGCGGAACGAGCTG
GGCAGCAATGTGGTGGACGTGGACACTGTCACCGCTGTCGTGGCAGACCT
CACCAGTGGGGAGCAAGATCTCGCCGACAGCAGCACGCAGATACAGGACG
CTTTCCACCGACCGCGGCTCTACTTCGACCCCATCAGGAACTCTCTTTTA
ATGTGA
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