prot_H-elongata_contig50857.12345.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50857.12345.1
Unique Nameprot_H-elongata_contig50857.12345.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.460e-22
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            MR DLDGLDVFFPY+FMYPEQYDYMLELKRSLDAKGHCLLEMPTG
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 89.0 bits (219), Expect = 3.470e-21
Identity = 36/45 (80.00%), Postives = 45/45 (100.00%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            M+F+LDG+DV+FPY+++YPEQY+YMLELKR+LDAKGHCLLEMPTG
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A835T392_CHLIN (Helicase ATP-binding domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T392_CHLIN)

HSP 1 Score: 85.1 bits (209), Expect = 6.390e-20
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            MRF+L+GL V+FPYE++YPEQY YMLELKR+LDA+GHCLLEMPTG
Sbjct:    1 MRFNLEGLTVYFPYEYIYPEQYRYMLELKRALDARGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A250XN93_9CHLO (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XN93_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.710e-19
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            M+F L+GLDV+FPYEF+YPEQY YMLELKRSLDA+GHCLLEMPTG
Sbjct:    1 MKFKLEGLDVYFPYEFIYPEQYSYMLELKRSLDARGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A7S1CWE2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CWE2_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 4.060e-19
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            M+F L+GL VFFPYE++YPEQY YM+ELK +LDAKGHCLLEMPTG
Sbjct:    1 MKFQLEGLTVFFPYEYIYPEQYQYMVELKHALDAKGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A6S7I8T9_PARCT (TFIIH basal transcription factor complex helicase XPD subunit (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I8T9_PARCT)

HSP 1 Score: 80.1 bits (196), Expect = 6.490e-19
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            M+ ++DGL V+FPY+++YPEQY YM ELKRSLDAKGHCLLEMP+G
Sbjct:    1 MKLNIDGLLVYFPYDYIYPEQYSYMFELKRSLDAKGHCLLEMPSG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A7S2WST0_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WST0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.100e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            MRF+LDGLDVFFPY  +YPEQYDYMLELKR+LDAKG CLLEMPTG
Sbjct:    1 MRFNLDGLDVFFPYPTIYPEQYDYMLELKRALDAKGSCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 8.720e-19
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            M+F+L+GL V+FPYE++YPEQY YMLELKRSLDA+GHCLLEMPTG
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A059LDS7_9CHLO (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LDS7_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.210e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            M+F L+GL V+FPYE++YPEQY YM ELK +LDAKGHCLLEMPTG
Sbjct:    1 MKFQLEGLTVYFPYEYIYPEQYKYMQELKHALDAKGHCLLEMPTG 45          
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 85.9 bits (211), Expect = 2.060e-18
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
            +RFDLDGLD+FFPY+ +Y EQY+YMLELKR+LDAKGHCLLEMPTG
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTG 46          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI2.460e-2295.56General transcription and DNA repair factor IIH he... [more]
A0A7R9TIP8_9VIRI3.470e-2180.00Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A835T392_CHLIN6.390e-2080.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A250XN93_9CHLO1.710e-1984.44General transcription and DNA repair factor IIH he... [more]
A0A7S1CWE2_9CHLO4.060e-1977.78Hypothetical protein (Fragment) n=1 Tax=Picochloru... [more]
A0A6S7I8T9_PARCT6.490e-1973.33TFIIH basal transcription factor complex helicase ... [more]
A0A7S2WST0_9STRA8.100e-1986.67General transcription and DNA repair factor IIH he... [more]
A0A835XSX7_9CHLO8.720e-1980.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A059LDS7_9CHLO1.210e-1875.56Helicase ATP-binding domain-containing protein (Fr... [more]
K8YZX4_NANGC2.060e-1882.22General transcription and DNA repair factor IIH he... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 3..45
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 3..45
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..45
score: 9.648

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50857contigH-elongata_contig50857:541..678 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50857.12345.1mRNA_H-elongata_contig50857.12345.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50857 541..678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50857.12345.1 ID=prot_H-elongata_contig50857.12345.1|Name=mRNA_H-elongata_contig50857.12345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001945RAD3/XPD
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3