prot_H-elongata_contig50779.12330.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50779.12330.1
Unique Nameprot_H-elongata_contig50779.12330.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length243
Homology
BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.590e-31
Identity = 107/251 (42.63%), Postives = 131/251 (52.19%), Query Frame = 0
Query:    3 TPHHSGEGLGDPQPAGLLKVSPEELA-------AGTPHALLPSEEAVPEERFLFGVDPENMSLEEAYVMVGRIEQRHKALAEQLRREIG-------------------------------------HFGDAAAVTLLCRRLSLVRDALSRPLKSLMLRDSALSLRKRLPNRLWMAHYRELEVVQHWLRKLVQPASAGATGIVGTGAGAEPPRQGRQRRQQQQHQTLRSRLFLLIEEAEKDMWGMVESVERQ 209
            TP   G      QPAGLLKVS EEL             A   +  A+P +    G DP+ M +E+AY MV  IE++HK L E LRREIG                                       G+      L  ++S VR ALSR L SL+ RD   SLRKRLPNRLWMAHYRELEV+Q  LR+L+     GA G   T AGA       Q+++Q+Q Q LRSRLF L++EAE+D+ GMVE+VERQ
Sbjct:  227 TPRSGGGRGARQQPAGLLKVSAEELLLSEGKSRGAATAAAAAATRALPGD---LGGDPDEMGIEDAYAMVSGIERQHKTLLESLRREIGLVAAGRPGAAQATSGSAAVGXXXXXXXXXXXXXXXXXXXGELLPGAALYGKVSRVRVALSRALGSLIRRDPGFSLRKRLPNRLWMAHYRELEVIQQRLRQLL----TGAGGASDT-AGAS------QQQRQKQPQALRSRLFALVDEAERDIGGMVEAVERQ 463          
BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.080e-8
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 0
Query:   65 VGRIEQRHKALAEQLRREIG-----------------HFGDAA-----AVTL-LCRRLSLVRDALSRPLKSLMLRDSALSLRKRLPNRLWMAHYRELEVVQHWLRKLVQPASAGATGIVGTGAGAEPPRQGRQRRQQQQHQTLRSRLFLLIEEAEKDMWGMVESVER 208
            + R+E+R+K++ EQLR E+G                   G+ A     A++  L   L   R  L+   ++L+ RD  L+ R++LP+RLW++ Y+EL+ VQ  L+ L  PA A A             R G +R  Q     LR+ LF +I +AE+++ G+V ++ER
Sbjct:    5 MARLEKRYKSILEQLRGELGLDPGYVPRAHPSERGHGQPGNTASGYFHAISAPLWESLQKHRQPLTSATRALIQRDLPLAARRKLPHRLWLSFYKELDAVQQTLKLLATPAGAAAL-----------TRDGPRRAPQANADALRALLFCMIGQAEREIGGLVSAIER 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G542_ECTSI1.590e-3142.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPQ7_9STRA5.080e-831.74Zc3h12a-like ribonuclease NYN domain-containing pr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 203..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50779contigH-elongata_contig50779:1242..1970 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50779.12330.1mRNA_H-elongata_contig50779.12330.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50779 1242..1971 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50779.12330.1 ID=prot_H-elongata_contig50779.12330.1|Name=mRNA_H-elongata_contig50779.12330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
KTTPHHSGEGLGDPQPAGLLKVSPEELAAGTPHALLPSEEAVPEERFLFG
VDPENMSLEEAYVMVGRIEQRHKALAEQLRREIGHFGDAAAVTLLCRRLS
LVRDALSRPLKSLMLRDSALSLRKRLPNRLWMAHYRELEVVQHWLRKLVQ
PASAGATGIVGTGAGAEPPRQGRQRRQQQQHQTLRSRLFLLIEEAEKDMW
GMVESVERQIDEARDTKAKSKANKAAVSSSSLPSSSSSLSVSL
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