mRNA_H-elongata_contig50779.12330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig50779.12330.1
Unique Name	mRNA_H-elongata_contig50779.12330.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.590e-31
Identity = 107/251 (42.63%), Postives = 131/251 (52.19%), Query Frame = 1

Query:    7 TPHHSGEGLGDPQPAGLLKVSPEELA-------AGTPHALLPSEEAVPEERFLFGVDPENMSLEEAYVMVGRIEQRHKALAEQLRREIG-------------------------------------HFGDAAAVTLLCRRLSLVRDALSRPLKSLMLRDSALSLRKRLPNRLWMAHYRELEVVQHWLRKLVQPASAGATGIVGTGAGAEPPRQGRQRRQQQQHQTLRSRLFLLIEEAEKDMWGMVESVERQ 627
            TP   G      QPAGLLKVS EEL             A   +  A+P +    G DP+ M +E+AY MV  IE++HK L E LRREIG                                       G+      L  ++S VR ALSR L SL+ RD   SLRKRLPNRLWMAHYRELEV+Q  LR+L+     GA G   T AGA       Q+++Q+Q Q LRSRLF L++EAE+D+ GMVE+VERQ
Sbjct:  227 TPRSGGGRGARQQPAGLLKVSAEELLLSEGKSRGAATAAAAAATRALPGD---LGGDPDEMGIEDAYAMVSGIERQHKTLLESLRREIGLVAAGRPGAAQATSGSAAVGXXXXXXXXXXXXXXXXXXXGELLPGAALYGKVSRVRVALSRALGSLIRRDPGFSLRKRLPNRLWMAHYRELEVIQQRLRQLL----TGAGGASDT-AGAS------QQQRQKQPQALRSRLFALVDEAERDIGGMVEAVERQ 463

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BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.080e-8
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 1

Query:  193 VGRIEQRHKALAEQLRREIG-----------------HFGDAA-----AVTL-LCRRLSLVRDALSRPLKSLMLRDSALSLRKRLPNRLWMAHYRELEVVQHWLRKLVQPASAGATGIVGTGAGAEPPRQGRQRRQQQQHQTLRSRLFLLIEEAEKDMWGMVESVER 624
            + R+E+R+K++ EQLR E+G                   G+ A     A++  L   L   R  L+   ++L+ RD  L+ R++LP+RLW++ Y+EL+ VQ  L+ L  PA A A             R G +R  Q     LR+ LF +I +AE+++ G+V ++ER
Sbjct:    5 MARLEKRYKSILEQLRGELGLDPGYVPRAHPSERGHGQPGNTASGYFHAISAPLWESLQKHRQPLTSATRALIQRDLPLAARRKLPHRLWLSFYKELDAVQQTLKLLATPAGAAAL-----------TRDGPRRAPQANADALRALLFCMIGQAEREIGGLVSAIER 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot

BLAST of mRNA_H-elongata_contig50779.12330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G542_ECTSI	1.590e-31	42.63	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YPQ7_9STRA	5.080e-8	31.74	Zc3h12a-like ribonuclease NYN domain-containing pr...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig50779	contig	H-elongata_contig50779:1242..1971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	135.6
Seed ortholog evalue	3.1e-29
Seed eggNOG ortholog	2880.D7G542
Preferred name	EBS1
KEGG ko	ko:K11124,ko:K11132,ko:K18668
KEGG Pathway	ko03015,map03015
GOs	GO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.	zinc finger CCCH-type containing
EggNOG OGs	KOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03019,ko03032
Hectar predicted targeting category	other localisation
Exons	1
Model size	732
Cds size	729
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930833.3388212-CDS-H-elongata_contig50779:1241..1970	1622930833.3388212-CDS-H-elongata_contig50779:1241..1970	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig50779 1242..1970 +
1691679590.0844035-CDS-H-elongata_contig50779:1241..1970	1691679590.0844035-CDS-H-elongata_contig50779:1241..1970	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig50779 1242..1970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig50779.12330.1	prot_H-elongata_contig50779.12330.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig50779 1242..1970 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig50779:1242..1971+
coding sequence from alignment at H-elongata_contig50779:1242..1971+

protein sequence of mRNA_H-elongata_contig50779.12330.1

>prot_H-elongata_contig50779.12330.1 ID=prot_H-elongata_contig50779.12330.1|Name=mRNA_H-elongata_contig50779.12330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
KTTPHHSGEGLGDPQPAGLLKVSPEELAAGTPHALLPSEEAVPEERFLFG
VDPENMSLEEAYVMVGRIEQRHKALAEQLRREIGHFGDAAAVTLLCRRLS
LVRDALSRPLKSLMLRDSALSLRKRLPNRLWMAHYRELEVVQHWLRKLVQ
PASAGATGIVGTGAGAEPPRQGRQRRQQQQHQTLRSRLFLLIEEAEKDMW
GMVESVERQIDEARDTKAKSKANKAAVSSSSLPSSSSSLSVSL

mRNA from alignment at H-elongata_contig50779:1242..1971+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig50779.12330.1 ID=mRNA_H-elongata_contig50779.12330.1|Name=mRNA_H-elongata_contig50779.12330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=730bp|location=Sequence derived from alignment at H-elongata_contig50779:1242..1971+ (Himanthalia elongata Himel1 dioecious)
AAAACGACTCCGCATCACAGCGGGGAGGGACTAGGCGATCCTCAACCGGC
CGGCCTCCTTAAGGTCTCACCGGAAGAGCTCGCGGCTGGGACCCCCCATG
CCCTACTTCCGTCTGAGGAAGCTGTCCCGGAGGAACGTTTCCTCTTTGGC
GTCGATCCTGAGAATATGAGCCTGGAAGAGGCCTACGTAATGGTAGGGAG
GATTGAGCAGCGCCACAAAGCGCTCGCGGAACAGCTGCGCCGGGAGATCG
GCCACTTTGGAGATGCGGCAGCCGTGACCCTGCTATGTCGGAGGTTATCT
CTTGTGCGGGACGCGCTTAGCCGGCCCCTTAAGTCTCTGATGCTGAGAGA
TTCCGCCCTCTCGCTGCGGAAACGCCTGCCAAACCGGCTCTGGATGGCGC
ATTACCGGGAGTTGGAGGTCGTTCAGCACTGGCTCCGGAAACTTGTGCAG
CCAGCCTCTGCGGGGGCCACAGGCATTGTCGGCACCGGCGCTGGTGCCGA
ACCGCCGAGGCAGGGCAGGCAGCGAAGGCAGCAGCAGCAACACCAGACGC
TTCGATCCCGTCTGTTCCTGCTCATCGAGGAAGCCGAGAAGGACATGTGG
GGCATGGTGGAGTCGGTGGAGCGTCAGATAGACGAAGCACGGGATACCAA
GGCTAAATCTAAGGCTAACAAAGCGGCAGTGTCATCTTCATCATTGCCGT
CGTCGTCGTCTTCCTTGTCAGTGTCATTGT

Coding sequence (CDS) from alignment at H-elongata_contig50779:1242..1971+

>mRNA_H-elongata_contig50779.12330.1 ID=mRNA_H-elongata_contig50779.12330.1|Name=mRNA_H-elongata_contig50779.12330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig50779:1242..1971+ (Himanthalia elongata Himel1 dioecious)
AAAACGACTCCGCATCACAGCGGGGAGGGACTAGGCGATCCTCAACCGGC
CGGCCTCCTTAAGGTCTCACCGGAAGAGCTCGCGGCTGGGACCCCCCATG
CCCTACTTCCGTCTGAGGAAGCTGTCCCGGAGGAACGTTTCCTCTTTGGC
GTCGATCCTGAGAATATGAGCCTGGAAGAGGCCTACGTAATGGTAGGGAG
GATTGAGCAGCGCCACAAAGCGCTCGCGGAACAGCTGCGCCGGGAGATCG
GCCACTTTGGAGATGCGGCAGCCGTGACCCTGCTATGTCGGAGGTTATCT
CTTGTGCGGGACGCGCTTAGCCGGCCCCTTAAGTCTCTGATGCTGAGAGA
TTCCGCCCTCTCGCTGCGGAAACGCCTGCCAAACCGGCTCTGGATGGCGC
ATTACCGGGAGTTGGAGGTCGTTCAGCACTGGCTCCGGAAACTTGTGCAG
CCAGCCTCTGCGGGGGCCACAGGCATTGTCGGCACCGGCGCTGGTGCCGA
ACCGCCGAGGCAGGGCAGGCAGCGAAGGCAGCAGCAGCAACACCAGACGC
TTCGATCCCGTCTGTTCCTGCTCATCGAGGAAGCCGAGAAGGACATGTGG
GGCATGGTGGAGTCGGTGGAGCGTCAGATAGACGAAGCACGGGATACCAA
GGCTAAATCTAAGGCTAACAAAGCGGCAGTGTCATCTTCATCATTGCCGT
CGTCGTCGTCTTCCTTGTCAGTGTCATTGAAAACGACTCCGCATCACAGC
GGGGAGGGACTAGGCGATCCTCAACCGGCCGGCCTCCTTAAGGTCTCACC
GGAAGAGCTCGCGGCTGGGACCCCCCATGCCCTACTTCCGTCTGAGGAAG
CTGTCCCGGAGGAACGTTTCCTCTTTGGCGTCGATCCTGAGAATATGAGC
CTGGAAGAGGCCTACGTAATGGTAGGGAGGATTGAGCAGCGCCACAAAGC
GCTCGCGGAACAGCTGCGCCGGGAGATCGGCCACTTTGGAGATGCGGCAG
CCGTGACCCTGCTATGTCGGAGGTTATCTCTTGTGCGGGACGCGCTTAGC
CGGCCCCTTAAGTCTCTGATGCTGAGAGATTCCGCCCTCTCGCTGCGGAA
ACGCCTGCCAAACCGGCTCTGGATGGCGCATTACCGGGAGTTGGAGGTCG
TTCAGCACTGGCTCCGGAAACTTGTGCAGCCAGCCTCTGCGGGGGCCACA
GGCATTGTCGGCACCGGCGCTGGTGCCGAACCGCCGAGGCAGGGCAGGCA
GCGAAGGCAGCAGCAGCAACACCAGACGCTTCGATCCCGTCTGTTCCTGC
TCATCGAGGAAGCCGAGAAGGACATGTGGGGCATGGTGGAGTCGGTGGAG
CGTCAGATAGACGAAGCACGGGATACCAAGGCTAAATCTAAGGCTAACAA
AGCGGCAGTGTCATCTTCATCATTGCCGTCGTCGTCGTCTTCCTTGTCAG
TGTCATTG