prot_H-elongata_contig50558.12304.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50558.12304.1
Unique Nameprot_H-elongata_contig50558.12304.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
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BLAST of mRNA_H-elongata_contig50558.12304.1 vs. uniprot
Match: D8LCW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 8.970e-16
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:   12 EKESLRVMKQQLEAVHQLRVDLRRKDS---SLQLKVQEGQVTKDRAERLETHCHLLEERCSNL 71
            EKESL VM+QQL AVHQLR+DL+RKDS   SLQLKVQEG+  +DR  RLE HCHLLE+RCS L
Sbjct:    2 EKESLDVMRQQLAAVHQLRIDLQRKDSVIQSLQLKVQEGESARDREGRLEAHCHLLEKRCSCL 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50558.12304.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCW4_ECTSI8.970e-1673.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availableCOILSCoilCoilcoord: 54..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50558contigH-elongata_contig50558:269..1048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50558.12304.1mRNA_H-elongata_contig50558.12304.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50558 269..1048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50558.12304.1 ID=prot_H-elongata_contig50558.12304.1|Name=mRNA_H-elongata_contig50558.12304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
RAARELEDLRAEKESLRVMKQQLEAVHQLRVDLRRKDSSLQLKVQEGQVT
KDRAERLETHCHLLEERCSNL
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