prot_H-elongata_contig50480.12291.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50480.12291.1
Unique Nameprot_H-elongata_contig50480.12291.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
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BLAST of mRNA_H-elongata_contig50480.12291.1 vs. uniprot
Match: A0A6H5KJA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.810e-17
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    4 MVAFPVGTFFALYDFFLVDAAHKTRTFCSGIAAVLAANGVMAAYAIVALKEGPGDAGAETGSKRPVDGTSAKVD 77
            MVAFP+GTFFA +D+ L D A  TRTFCSG+AAVLAAN VMA YAIVA+KE     G E G  RP   T  KVD
Sbjct:   46 MVAFPIGTFFAFHDYILRDTAPNTRTFCSGMAAVLAANIVMAGYAIVAIKED----GVEEGGNRPRT-TPLKVD 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50480.12291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJA2_9PHAE2.810e-1763.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019013Vacuolar ATPase assembly integral membrane protein Vma21PFAMPF09446VMA21coord: 2..51
e-value: 3.4E-10
score: 39.9
IPR019013Vacuolar ATPase assembly integral membrane protein Vma21PANTHERPTHR31792FAMILY NOT NAMEDcoord: 2..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..77
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availableTMHMMTMhelixcoord: 4..21
NoneNo IPR availableTMHMMTMhelixcoord: 30..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50480contigH-elongata_contig50480:1019..2269 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50480.12291.1mRNA_H-elongata_contig50480.12291.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50480 843..2285 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50480.12291.1 ID=prot_H-elongata_contig50480.12291.1|Name=mRNA_H-elongata_contig50480.12291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MLLMVAFPVGTFFALYDFFLVDAAHKTRTFCSGIAAVLAANGVMAAYAIV
ALKEGPGDAGAETGSKRPVDGTSAKVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019013Vma21