prot_H-elongata_contig50470.12289.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50470.12289.1
Unique Nameprot_H-elongata_contig50470.12289.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.530e-34
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0
Query:    1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            EC GCS+AK + K I R T +R+DK   R+FVD+ G K +AS+ GK Y ++V D+F+R  W YF++ K D    F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  698 ECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.530e-34
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0
Query:    1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            EC GCS+AK + K I R T +R+DK   R+FVD+ G K +AS+ GK Y ++V D+F+R  W YF++ K D    F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  405 ECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.300e-33
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 0
Query:    2 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCS++K   K I   T  R+DK   R+FVD+ G K +AS+ GK Y ++V D+F+R TW YF++ K D  + F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.770e-33
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 0
Query:    2 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCS++K + K I R T  R+DK   R+FVD+ G K  AS+ GK Y ++V D+F+R TW YF+R K D  + F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.810e-33
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 0
Query:    1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAE 132
            EC GC  AKGL KPI +T STRA K   R+FVD+ G+  + S+ GK Y L+V D+++R+   YF++ K D    FE +LA+ R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T A S ++NGVAE
Sbjct:  976 ECLGCLTAKGLSKPIPKT-STRAAKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAE 1107          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.640e-33
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 0
Query:    2 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCS+ K + K I   T+  +DK   R+FV++ G+K +ASI GK Y +++ D+F+R  W YF+R K D  + F  FLA+ R  G PS +E+VRSD GGEF  G+FA +C    I+QE T A S +FNGVAER
Sbjct:  426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.060e-32
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 0
Query:    2 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCS++K + K I R T  R+DK   R+FVD+ G K IAS+ GK Y ++V D+F+R TW YF++ + D    F  FLA  R    PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.400e-31
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 0
Query:    2 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCS++K + K I   T  R+DK   R+FVD+ G K IAS+ GK Y ++V D+F+R TW  F+R K D  + F  FLA  R  G PS VE+VRSD GGEF  G+F  +C    I+QE T A S ++NGVAER
Sbjct:  220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAER 352          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.020e-30
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 0
Query:    2 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCS++KG  KP+ ++TS+RA     R+++D+ G+    SI G  Y L++ D+FSR+T  +F++ K D    FE FLAD R  G P  V + R+D GGEF+G FA++CRRH I+QELT   +  +  VAER
Sbjct:  456 CLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAER 587          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.300e-27
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 0
Query:    2 CEGCSVAKGLG---------------------KPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTADSLKFNGVAER 133
            C GCSV KG                       KP+ ++TSTRADK   R+++D+ G+    SI    Y L++ D+FSR+T  +F++ K D    FE FL D R    P  V + R+D+GGEF+G FA++ RRH I+QE T   + K+N VAER
Sbjct:  169 CLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAER 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE1.530e-3450.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.530e-3450.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE1.300e-3349.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE1.770e-3351.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K583_9PHAE1.810e-3350.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE8.640e-3348.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE7.060e-3249.62Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRL9_9PHAE1.400e-3149.62Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPZ8_9PHAE2.020e-3045.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE2.300e-2739.87Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 27..133
e-value: 2.1E-13
score: 50.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 19..133
score: 13.335
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 17..133
e-value: 4.9E-19
score: 70.3
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 19..133
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 19..133
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 22..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50470contigH-elongata_contig50470:3288..3686 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50470.12289.1mRNA_H-elongata_contig50470.12289.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50470 3288..3686 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50470.12289.1 ID=prot_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYML
VVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGG
EFKGDFAKLCRRHNIRQELTTADSLKFNGVAER
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf