prot_H-elongata_contig50334.12267.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50334.12267.1
Unique Nameprot_H-elongata_contig50334.12267.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length334
Homology
BLAST of mRNA_H-elongata_contig50334.12267.1 vs. uniprot
Match: D8LFD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD8_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.310e-55
Identity = 175/389 (44.99%), Postives = 209/389 (53.73%), Query Frame = 0
Query:   15 PVFLTFRFRREPLKK-PTEDGSVIGSGLLGGGI----------ETVKVDLDAR-------------------EDEGES--EENDSGGEQIAVLKGRVALNCPTGHIVHVNGGGRGGGEGRKRAGSRGGEFDV-KGGGEKGRKRPKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEDSDRDDDAEPEEGLDYDPKTLVSYTICGGIGYDRPEVLLRAVVYARGDGPACVMPPPDDEEDPE------------------SVFRDQEDVFDCNVDGPALASVGRALGLHY-DPPESELDPGS----NAEVFLANSR------------------GDSGVVDGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFG-DDGSDSDDG 328
            PVFLTFRFRREPL+  P E     G   +GGG           E + + LD                     ++EG S  E+  S     A +     ++C  G     +  G+   EGRKRAGSRG E +  +GG +KGRKRP  XXXXXXXXXXXXXXXXXXX                 + D     E +EGLDY+P+TLVSY+I GGIGYD P  LL+A+VYARGDGPACVMPP                          S   DQEDVFDC+V+GPALA++GRALGLH  DPP S+ D  S      +V + +S                   G+ G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG DD  DSDDG
Sbjct:  215 PVFLTFRFRREPLRSGPAEPSRGEGGRAVGGGDARDHDHQEAGEVIDLALDDXXXXXXXXXXXXXXXXXPKGDNEGGSLFEKKGSATAVPAKIAAGKDVSCDGGXXXXXDSHGK---EGRKRAGSRGRESEEGRGGNDKGRKRPXXXXXXXXXXXXXXXXXXXXXGKQGV------------NGDAKQCEEDDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXXXGSACNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSASDDGGDVRMKDSGARPSASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDDLDDSDDG 588          
BLAST of mRNA_H-elongata_contig50334.12267.1 vs. uniprot
Match: A0A6H5K398_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K398_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.170e-48
Identity = 103/201 (51.24%), Postives = 123/201 (61.19%), Query Frame = 0
Query:  164 DSDRDDDAEPEEGLDYDPKTLVSYTICGGIGYDRPEVLLRAVVYARGDGPACVMPPPDDEEDPE-----------------SVFRDQEDVFDCNVDGPALASVGRALGLHY-DPP------ESELDPGSNAEVFLANSR----------------GDSGVVDGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFGDDGSD 324
            D D     E +EGLDY+P+TLVSY+I GGIGYD P  LL+A+VYARGDGPACVMPP                         SV  DQEDVFDC+V+GPALA++GRALGLH  DPP      +S  D G +  +  + +R                G+ G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG+D SD
Sbjct:  373 DGDAKQCEEDDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXGGSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSHSDSSSDDGGDVRMKDSGARPSASAKGPEKESDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDLVEVVASSVFGEDDSD 573          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50334.12267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFD8_ECTSI2.310e-5544.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K398_9PHAE1.170e-4851.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50334contigH-elongata_contig50334:409..2904 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50334.12267.1mRNA_H-elongata_contig50334.12267.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50334 343..3123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50334.12267.1 ID=prot_H-elongata_contig50334.12267.1|Name=mRNA_H-elongata_contig50334.12267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
MSGAKEGGKTRQVLPVFLTFRFRREPLKKPTEDGSVIGSGLLGGGIETVK
VDLDAREDEGESEENDSGGEQIAVLKGRVALNCPTGHIVHVNGGGRGGGE
GRKRAGSRGGEFDVKGGGEKGRKRPKGGRRRQEGDAGRDDTEEEGGGVDE
NGGAEDDPGGSFEDSDRDDDAEPEEGLDYDPKTLVSYTICGGIGYDRPEV
LLRAVVYARGDGPACVMPPPDDEEDPESVFRDQEDVFDCNVDGPALASVG
RALGLHYDPPESELDPGSNAEVFLANSRGDSGVVDGGMTLSDLVWWIMLF
PFFEKEFDMVEVVASSVFGDDGSDSDDGDCDSE*
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