prot_H-elongata_contig50146.12241.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50146.12241.1
Unique Nameprot_H-elongata_contig50146.12241.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A0D7B749_9AGAR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B749_9AGAR)

HSP 1 Score: 52.4 bits (124), Expect = 4.660e-6
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P++ +     A++N LRC IC+E+   PVSL C   +FCS CIR  L   K  CP CR
Sbjct:   14 FPESSTAPGLRALDNALRCTICKELFSGPVSLRC-GHSFCSQCIRQALS-AKQECPTCR 70          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A4S8MZ16_DENBC (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MZ16_DENBC)

HSP 1 Score: 52.4 bits (124), Expect = 4.830e-6
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P+  +     +++  LRC IC E  E PV+L  C   FCSLCIR +L  TK  CP CR
Sbjct:   22 FPENTAAPGLRSLDTALRCPICSEFFEGPVTL-ICGHCFCSLCIRTFLG-TKQECPTCR 78          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A401GKG0_9APHY (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GKG0_9APHY)

HSP 1 Score: 52.0 bits (123), Expect = 6.620e-6
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P  D       ++  LRC+ICRE+ + PV++ C    FCSLCIR  L   K  CP+CR
Sbjct:   18 FPPADVAPGVRQLDEALRCSICRELYQAPVTISC-GHCFCSLCIRSVLQE-KGECPLCR 74          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A7S3C9W6_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C9W6_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 6.640e-6
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 0
Query:   12 LEEDEVYQYPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTK----PRCPICR 78
            +E DE   +           +E  LRC IC+E  + PVS+  C  +FCSLCIR  L+  +    PRCP CR
Sbjct:   19 MEVDEAADWRGCQGFEGLETLEESLRCDICKEFLDAPVSVAGCGHSFCSLCIRASLEFQQRAGSPRCPTCR 89          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: UPI00200876C2 (uncharacterized protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI00200876C2)

HSP 1 Score: 52.0 bits (123), Expect = 6.660e-6
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P +D       ++  LRC++C E+ + PV+L C    FCSLC+R YL + K  CP CR
Sbjct:   23 FPPSDVAPGLRLLDEALRCSVCHELYDAPVTLNC-GHCFCSLCVRNYL-KDKKECPSCR 79          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A6G6FQK1_9APHY (RING-type domain-containing protein n=1 Tax=Trametes gibbosa TaxID=160864 RepID=A0A6G6FQK1_9APHY)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPIC 77
            +P T +     A+++ LRC ICR+  + PVSLPC   +FCSLCIR  L      CP C
Sbjct:   26 FPATATAPGLRALDDALRCDICRDFYDAPVSLPCAH-SFCSLCIRSALP-ISATCPTC 81          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A4Y7QJU6_9AGAM (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QJU6_9AGAM)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P   S     ++++ LRC IC E  + PV+LPC    FCSLCIR ++ R +  CP+CR
Sbjct:   16 FPDEKSAPGLRSLDHALRCNICGEFFDGPVTLPC-GHGFCSLCIREHM-RQESNCPMCR 72          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A1C7ME29_GRIFR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7ME29_GRIFR)

HSP 1 Score: 50.4 bits (119), Expect = 2.280e-5
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P          +++ LRC+ICRE  E PV+L C    FCS CIR  L   KP CP CR
Sbjct:   20 FPLPSVAPGLRQLDDALRCSICREFYEAPVTLNC-GHCFCSFCIRSALPE-KPECPTCR 76          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A5K1JT41_9APHY (DNA repair protein rad18 (Fragment) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1JT41_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 2.280e-5
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 0
Query:   20 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            +P   +     A ++ LRC ICR+  + PVSLPC    FCS CIR  L   K +CP CR
Sbjct:   16 FPDDATTPGLRAFDDALRCGICRDFYDAPVSLPC-GHCFCSACIRSALPE-KAQCPACR 72          
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A820I8F4_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820I8F4_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 2.800e-5
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0
Query:   32 IENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 78
            I++ L+C IC++  E PVSL  C   FC +CI+++L R +  CPICR
Sbjct:   17 IDDELKCVICKQPLEYPVSLSICNHTFCKVCIQIWLYRNQT-CPICR 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A0D7B749_9AGAR4.660e-644.07Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A4S8MZ16_DENBC4.830e-644.07Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A401GKG0_9APHY6.620e-642.37Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A7S3C9W6_9CHLO6.640e-639.44Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
UPI00200876C26.660e-640.68uncharacterized protein n=1 Tax=Antrodia serialis ... [more]
A0A6G6FQK1_9APHY1.240e-544.83RING-type domain-containing protein n=1 Tax=Tramet... [more]
A0A4Y7QJU6_9AGAM1.240e-542.37Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A1C7ME29_GRIFR2.280e-544.07Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A5K1JT41_9APHY2.280e-544.07DNA repair protein rad18 (Fragment) n=1 Tax=Ganode... [more]
A0A820I8F4_9BILA2.800e-546.81Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 38..77
e-value: 0.0029
score: 26.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 38..78
score: 10.881
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 38..77
e-value: 7.3E-6
score: 25.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..78
e-value: 3.0E-12
score: 48.2
NoneNo IPR availablePANTHERPTHR14134:SF2E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 24..78
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 37..78
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 24..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50146contigH-elongata_contig50146:1829..3723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50146.12241.1mRNA_H-elongata_contig50146.12241.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50146 1829..3723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50146.12241.1 ID=prot_H-elongata_contig50146.12241.1|Name=mRNA_H-elongata_contig50146.12241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MSRGKRQQEEELEEDEVYQYPKTDSGTVFAAIENILRCAICREVSEPPVS
LPCCQQAFCSLCIRLYLDRTKPRCPICR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR039577Rad18