prot_H-elongata_contig50111.12239.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50111.12239.1
Unique Nameprot_H-elongata_contig50111.12239.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
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BLAST of mRNA_H-elongata_contig50111.12239.1 vs. uniprot
Match: A0A6H5K220_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K220_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.910e-23
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0 
Query:    1 GEVVAKRSVFRPSIIKDVIWMVLNMIGLFFGTLSAKTPTRKRKSERGYHNYLGXXXXXXXXXXXXXXXXXRP---GPNIHGHQPP 82
            G+VVA+RSVFRPSII ++ W VLN++GLFFGT+S KTPTRK + ERGYHNYLG  XXXXXXXXXXXXXXX     GPNIH  QPP
Sbjct:    7 GQVVAQRSVFRPSIIMEMFWKVLNIVGLFFGTMSTKTPTRKPRKERGYHNYLGRGXXXXXXXXXXXXXXXXXXXRGPNIHTVQPP 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50111.12239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K220_9PHAE7.910e-2372.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024491Selenoprotein SelK/SelGPFAMPF10961SelK_SelGcoord: 1..81
e-value: 7.3E-15
score: 55.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..17
NoneNo IPR availableTMHMMTMhelixcoord: 18..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50111contigH-elongata_contig50111:2716..3749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50111.12239.1mRNA_H-elongata_contig50111.12239.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50111 2716..3749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50111.12239.1 ID=prot_H-elongata_contig50111.12239.1|Name=mRNA_H-elongata_contig50111.12239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
GEVVAKRSVFRPSIIKDVIWMVLNMIGLFFGTLSAKTPTRKRKSERGYHN
YLGGGDDGGDGGGGDSRRRRRPGPNIHGHQPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG