prot_H-elongata_contig5009.12233.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5009.12233.1
Unique Nameprot_H-elongata_contig5009.12233.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length710
Homology
BLAST of mRNA_H-elongata_contig5009.12233.1 vs. uniprot
Match: D7FJE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE8_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 1.150e-94
Identity = 214/413 (51.82%), Postives = 257/413 (62.23%), Query Frame = 0
Query:    1 MEERVLPPEVRIKIVFAQANAGHREEE-IEANVLRLDGLVRTLAMYGILERNALDCSKSEKLTPDRELQLGKMLVAAVQLELFQMLDDICEAGDVENDLFDDLCSDAIQEGRRAGFFHLAPELLLAPGSGYKRLLQIRKDQIVEEIANASGLRAFAGYDCQE---EPSPPASPRDGTVK------VECVSVGSKMGRAGLPGLKIGD---SDSTTVDGVAPSPSSQFSSSPRL-----GHHRSRTQRVRDLLSSIDGLVMESEKPEPEEALVSFPPLSPECAVQSEVSA----ASTGGFNRRN----KRHSAGETDDGGERAGRFSLRTPPYREPDGPDEQSPVTQTFFPHEKPWR-TPFKATPQPDLPIHGSSTARGAVGVVEADGVEF---SDKLLAEVDWLIAGTEAALG 383
            MEERVLPPE+R+KIVFAQANA   EEE +EA+V RLDGLVRTLA+YGILER+++D + S+KLTPDRE +LGKMLVAAVQLELF+MLDDICEAGDVEN+LFDDLC+D IQ+GRR+GF  +  ELLL+PGSGYKRLLQ+RKDQI+EEIA+ +GLRA  G+DCQ    E S   SP  G  K       +C S GS    AG PGL+I     S S  +D  +PS                GH R++TQRVRDLLSSIDGLV ESE     EAL   P L+P  A ++  +A    A  G    R+    KR S G  D     + R SLRTPP  + +G D  S   + FFP+E+ WR + F +                               +D LLAEVDWLIAGT AALG
Sbjct:    1 MEERVLPPEIRLKIVFAQANAVEEEEERLEADVKRLDGLVRTLALYGILERDSMDSTTSDKLTPDRERELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLRALGGHDCQRSSSESSARGSPSHGLRKRVAAMDSDCGSPGSA---AGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESE-----EALTGMPSLAPNGANENGAAAXXXXAGRGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEG-DGSSHSDRAFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALG 404          
BLAST of mRNA_H-elongata_contig5009.12233.1 vs. uniprot
Match: A0A836CGE6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.060e-17
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 0
Query:    2 EERVLPPEVRIKIVFA-QANAGHREEEIEANVLRLDGLVRTLAMYGILERNALDCSKSEKLTPDRELQLGKMLVAAVQLELFQMLDDICEAGDVENDLFDDLCSDAIQEGRRAGFFHLAPELLLAPGSGYKRLLQIRKDQIVEEIANASGLRAFAGY 157
            EER+LP EVRI ++ A +         ++A VLRL+GLVR LA+ G++    +    S  L   R   L K+LV + +LELF MLD++   GDV+N LF+ LC   +Q     GF  +   +LL P + +  LLQ R   + E +  A G +  A +
Sbjct:   43 EERLLPTEVRIALLIATETLQDGARTAMQARVLRLEGLVRVLALCGVVGGARVGRRSSVALARPRVRYLSKLLVTSAKLELFNMLDEVVRGGDVDNPLFNTLCQQEVQTHALQGFSSITVPVLLRPDNIFMALLQRRLFDVFEGVKRAGGAQLAAAH 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5009.12233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJE8_ECTSI1.150e-9451.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGE6_9STRA2.060e-1736.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5009contigH-elongata_contig5009:6117..10233 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5009.12233.1mRNA_H-elongata_contig5009.12233.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5009 5615..10259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5009.12233.1 ID=prot_H-elongata_contig5009.12233.1|Name=mRNA_H-elongata_contig5009.12233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=710bp
MEERVLPPEVRIKIVFAQANAGHREEEIEANVLRLDGLVRTLAMYGILER
NALDCSKSEKLTPDRELQLGKMLVAAVQLELFQMLDDICEAGDVENDLFD
DLCSDAIQEGRRAGFFHLAPELLLAPGSGYKRLLQIRKDQIVEEIANASG
LRAFAGYDCQEEPSPPASPRDGTVKVECVSVGSKMGRAGLPGLKIGDSDS
TTVDGVAPSPSSQFSSSPRLGHHRSRTQRVRDLLSSIDGLVMESEKPEPE
EALVSFPPLSPECAVQSEVSAASTGGFNRRNKRHSAGETDDGGERAGRFS
LRTPPYREPDGPDEQSPVTQTFFPHEKPWRTPFKATPQPDLPIHGSSTAR
GAVGVVEADGVEFSDKLLAEVDWLIAGTEAALGGVPPNLDGGEAAPTEGL
GAKAGETIEGGRLAAKTVNGHGDPTRRLEGVDAHQERSDGEGAEQGMGRA
EEVFEIVGEKETKVPNVGLPSYPLDASTTDVSIDTAPSPGARGSDASVTD
GEVRENEPALALGDDGGSPIEKQEATAVQDKPMTDGGIVDSSPVEAAVAD
ADVVTSRFVTDNSETASVGPGNARGLEAVVPFVGDGVATAESFGSQSVTV
LSVEREGAGNGVEVVDGGQVIPGSDTSGSSSGGGKASLGNGGIFGQRGDH
EGALPQALNMSALLGHPGVYDSDADEGDFGLSGISPSSSPATKSPQSPVV
INGMEVGDE*
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