prot_H-elongata_contig50057.12227.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50057.12227.1
Unique Nameprot_H-elongata_contig50057.12227.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length116
Homology
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BLAST of mRNA_H-elongata_contig50057.12227.1 vs. uniprot
Match: D7G3L5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.490e-46
Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 0 
Query:    1 ATSGSTSLVSLLDPHPEDVLALDADGCTPLHHAAASCKYDVVKFLASRANGRVYVPQRIKTNSVDAYMQETRATKRISMRIIQEARQRTGRFAVRTGAVVGKATSGASTMRGLTTR 116
            ATSGSTSL+SLLDP PEDVL LD+DGCTPLHHAAAS KYDVVKFLASRANGRV+ P RIKT+SVDA+MQETRATKRISMRIIQEARQR G   VRTG V+G    GA+ +RGL ++
Sbjct: 1321 ATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRVHAPARIKTDSVDAFMQETRATKRISMRIIQEARQRAGVTTVRTGGVLGTLAGGAAAVRGLASK 1436
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BLAST of mRNA_H-elongata_contig50057.12227.1 vs. uniprot
Match: A0A836CBL8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-19
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 0 
Query:    1 ATSGSTSLVSLLDPHPEDVLALDADGCTPLHHAAASCKYDVVKFLASRANGRVYV-PQRIKTNSVDAYMQETRATKRISMRIIQEARQ 87
            A  GSTSLVSLLDP PEDVL  DADG TPLHHA AS KYD+VKFLA+RAN +V+V P      ++DA   E  AT RIS+R   EAR+
Sbjct: 1003 AQGGSTSLVSLLDPLPEDVLLRDADGNTPLHHACASAKYDLVKFLAARANTQVHVGPALAGKGTMDAA--ELSATTRISLRFASEARE 1088
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50057.12227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L5_ECTSI1.490e-4677.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBL8_9STRA1.010e-1962.50P-loop containing nucleoside triphosphate hydrolas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatPFAMPF13606Ank_3coord: 25..47
e-value: 1.1E-4
score: 22.4
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..81
e-value: 1.0E-7
score: 33.4
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 2..48
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 1..45
score: 10.843

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50057contigH-elongata_contig50057:2903..3613 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50057.12227.1mRNA_H-elongata_contig50057.12227.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50057 2903..3615 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50057.12227.1 ID=prot_H-elongata_contig50057.12227.1|Name=mRNA_H-elongata_contig50057.12227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
ATSGSTSLVSLLDPHPEDVLALDADGCTPLHHAAASCKYDVVKFLASRAN
GRVYVPQRIKTNSVDAYMQETRATKRISMRIIQEARQRTGRFAVRTGAVV
GKATSGASTMRGLTTR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom