prot_H-elongata_contig4992.12214.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4992.12214.1
Unique Nameprot_H-elongata_contig4992.12214.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length293
Homology
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BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Match: A0A6H5L4K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.550e-11
Identity = 52/121 (42.98%), Postives = 69/121 (57.02%), Query Frame = 0 
Query:  168 EAEWPTELRNSIGIVTDLVVPCQTEIVTVERRAENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYRRGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHR 288
            EA W  EL++S+G+VTDLV+PCQ            GR+G        AG  GV     E  E  E   E+EREM  A++  Y +G++QL+ HA+ H + ARQRATD    +RTP QQN +R
Sbjct:  551 EARWAEELKSSVGVVTDLVLPCQ------------GRDG--------AGVDGVGIAIEEVGEEGEGH-EDEREMAAALEAIYEKGREQLERHAEVHGKEARQRATDAWLASRTPQQQNDYR 650
[Close]
BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Match: D7FXG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-10
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 0 
Query:  168 EAEWPTELRNSIGIVTDLVVPCQTEIVTVERRAENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYRRGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHR 288
            EA W  EL++S+G+VTDLV+PCQ            GR+G        AG  GV     E  E  E   E+EREM  A++  Y +G++QL+ HA+ H + ARQRATD    +RTP QQ+ +R
Sbjct:  212 EARWAEELKSSVGVVTDLVLPCQ------------GRDG--------AGVDGVGIAIEEGGEE-EXXXEDEREMAAALEAIYEKGREQLKRHAEVHGKEARQRATDAWLASRTPQQQSDYR 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4K7_9PHAE4.550e-1142.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXG8_ECTSI1.340e-1042.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4992contigH-elongata_contig4992:6263..7320 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4992.12214.1mRNA_H-elongata_contig4992.12214.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4992 6244..7966 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4992.12214.1 ID=prot_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MARAPSLEMKRRAGARQSSWKIEQPGVIISLDDRGQRVRRSREGSRRNVA
GEEDDIGVDFGDFGVDRRIRAGESRNKGEERRPVDGWGPRSVTGPVPGGW
DYDGVCTGSESCTGTISSVERPDGAGSCTLSSCSEEAGAWNDADGAGSVN
ESRAESTISASDGADEAEAEWPTELRNSIGIVTDLVVPCQTEIVTVERRA
ENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYR
RGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHRRTQR*
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