prot_H-elongata_contig49601.12160.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49601.12160.1
Unique Nameprot_H-elongata_contig49601.12160.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length56
Homology
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A6H5KXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.290e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVSQNLI 47
            MHR++AFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS  + NL+
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS--NDNLV 45          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: D8LH73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH73_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.300e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVSQNLI 47
            MHR++AFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS  + NL+
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS--NDNLV 45          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A835Z1U7_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.500e-12
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS 40
            MHR+KAFFK+TR+GK+L +V+DHYLRDDI CG+LAGK ++
Sbjct:    1 MHRNKAFFKRTRRGKVLHIVNDHYLRDDIACGTLAGKELT 40          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: W7TRQ4_9STRA (Exosome complex exonuclease rrp44 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRQ4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.830e-9
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVS-QNLIGVMFGVIVG 56
            M RSKAFFK+TR+GK++R++ +HYLRDDIG G+L G   S ++ + L+ +M G + G
Sbjct:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEG 57          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A4D9D432_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D432_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.750e-8
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVS-QNLIGVMFG 52
            M RSK FFK+TR+GK++R++ +HYLRDDIG G+L G   S ++ + L+ +M G
Sbjct:    1 MIRSKTFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEG 53          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A2S2QPA3_9HEMI (Exosome complex exonuclease RRP44 n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QPA3_9HEMI)

HSP 1 Score: 53.9 bits (128), Expect = 5.820e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    4 SKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGK 37
            SK F +KT++G IL++V +HYLRDDIGCGSLA K
Sbjct:    7 SKTFIRKTKRGNILKIVREHYLRDDIGCGSLACK 40          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A1Y1I3C2_KLENI (Ribonuclease II/R family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3C2_KLENI)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLA 35
            M++ K FFKKTR GKIL+V  +HYLRDDI CGSLA
Sbjct:    1 MYQQKQFFKKTRGGKILKVHREHYLRDDIVCGSLA 35          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A1R1PWH7_ZANCU (Exosome complex exonuclease RRP44 n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PWH7_ZANCU)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVS 43
            M RSK+F KKT+KGK++RVV +HYLRDDI CG    K  + +S
Sbjct:    1 MLRSKSFVKKTKKGKVVRVVKEHYLRDDIQCGYEGCKDPNCIS 43          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A2I3BR88_MOUSE (Exosome complex exonuclease RRP44 n=1 Tax=Mus musculus TaxID=10090 RepID=A0A2I3BR88_MOUSE)

HSP 1 Score: 50.1 bits (118), Expect = 2.590e-6
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLA 35
            M RSK F KKTR G ++++V +HYLRDDIGCG+ A
Sbjct:    1 MLRSKTFLKKTRAGGVVKIVREHYLRDDIGCGAPA 35          
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: G5C9E4_HETGA (Exosome complex exonuclease RRP44 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5C9E4_HETGA)

HSP 1 Score: 52.0 bits (123), Expect = 2.790e-6
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 0
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGS 33
            M +SK FFKKTR G +L++V +HYLRDDIGCG+
Sbjct:    1 MLKSKTFFKKTRTGGVLKIVREHYLRDDIGCGA 33          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXF0_9PHAE5.290e-1785.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH73_ECTSI5.300e-1785.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1U7_9STRA7.500e-1270.00RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
W7TRQ4_9STRA1.830e-950.88Exosome complex exonuclease rrp44 n=1 Tax=Nannochl... [more]
A0A4D9D432_9STRA4.750e-850.94Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2S2QPA3_9HEMI5.820e-767.65Exosome complex exonuclease RRP44 n=1 Tax=Sipha fl... [more]
A0A1Y1I3C2_KLENI1.490e-671.43Ribonuclease II/R family protein n=1 Tax=Klebsormi... [more]
A0A1R1PWH7_ZANCU1.490e-658.14Exosome complex exonuclease RRP44 n=1 Tax=Zancudom... [more]
A0A2I3BR88_MOUSE2.590e-662.86Exosome complex exonuclease RRP44 n=1 Tax=Mus musc... [more]
G5C9E4_HETGA2.790e-666.67Exosome complex exonuclease RRP44 n=1 Tax=Heteroce... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1010coord: 9..46
e-value: 1.1E-7
score: 33.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49601contigH-elongata_contig49601:3865..4032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49601.12160.1mRNA_H-elongata_contig49601.12160.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49601 3865..4032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49601.12160.1 ID=prot_H-elongata_contig49601.12160.1|Name=mRNA_H-elongata_contig49601.12160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVSQNLIGVM
FGVIVG
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