mRNA_H-elongata_contig49601.12160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49601.12160.1
Unique NamemRNA_H-elongata_contig49601.12160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A6H5KXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.290e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVSQNLI 141
            MHR++AFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS  + NL+
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS--NDNLV 45
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: D8LH73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH73_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.300e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVSQNLI 141
            MHR++AFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS  + NL+
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS--NDNLV 45
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A835Z1U7_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.500e-12
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVS 120
            MHR+KAFFK+TR+GK+L +V+DHYLRDDI CG+LAGK ++
Sbjct:    1 MHRNKAFFKRTRRGKVLHIVNDHYLRDDIACGTLAGKELT 40
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: W7TRQ4_9STRA (Exosome complex exonuclease rrp44 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRQ4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.830e-9
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVS-QNLIGVMFGVIVG 168
            M RSKAFFK+TR+GK++R++ +HYLRDDIG G+L G   S ++ + L+ +M G + G
Sbjct:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEG 57
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A4D9D432_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D432_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.750e-8
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVS-QNLIGVMFG 156
            M RSK FFK+TR+GK++R++ +HYLRDDIG G+L G   S ++ + L+ +M G
Sbjct:    1 MIRSKTFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEG 53
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A2S2QPA3_9HEMI (Exosome complex exonuclease RRP44 n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QPA3_9HEMI)

HSP 1 Score: 53.9 bits (128), Expect = 5.820e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   10 SKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGK 111
            SK F +KT++G IL++V +HYLRDDIGCGSLA K
Sbjct:    7 SKTFIRKTKRGNILKIVREHYLRDDIGCGSLACK 40
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A1Y1I3C2_KLENI (Ribonuclease II/R family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3C2_KLENI)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLA 105
            M++ K FFKKTR GKIL+V  +HYLRDDI CGSLA
Sbjct:    1 MYQQKQFFKKTRGGKILKVHREHYLRDDIVCGSLA 35
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A1R1PWH7_ZANCU (Exosome complex exonuclease RRP44 n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PWH7_ZANCU)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVS 129
            M RSK+F KKT+KGK++RVV +HYLRDDI CG    K  + +S
Sbjct:    1 MLRSKSFVKKTKKGKVVRVVKEHYLRDDIQCGYEGCKDPNCIS 43
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BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: A0A2I3BR88_MOUSE (Exosome complex exonuclease RRP44 n=1 Tax=Mus musculus TaxID=10090 RepID=A0A2I3BR88_MOUSE)

HSP 1 Score: 50.1 bits (118), Expect = 2.590e-6
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLA 105
            M RSK F KKTR G ++++V +HYLRDDIGCG+ A
Sbjct:    1 MLRSKTFLKKTRAGGVVKIVREHYLRDDIGCGAPA 35
[Close]
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Match: G5C9E4_HETGA (Exosome complex exonuclease RRP44 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5C9E4_HETGA)

HSP 1 Score: 52.0 bits (123), Expect = 2.790e-6
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGS 99
            M +SK FFKKTR G +L++V +HYLRDDIGCG+
Sbjct:    1 MLKSKTFFKKTRTGGVLKIVREHYLRDDIGCGA 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49601.12160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXF0_9PHAE5.290e-1785.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH73_ECTSI5.300e-1785.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1U7_9STRA7.500e-1270.00RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
W7TRQ4_9STRA1.830e-950.88Exosome complex exonuclease rrp44 n=1 Tax=Nannochl... [more]
A0A4D9D432_9STRA4.750e-850.94Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2S2QPA3_9HEMI5.820e-767.65Exosome complex exonuclease RRP44 n=1 Tax=Sipha fl... [more]
A0A1Y1I3C2_KLENI1.490e-671.43Ribonuclease II/R family protein n=1 Tax=Klebsormi... [more]
A0A1R1PWH7_ZANCU1.490e-658.14Exosome complex exonuclease RRP44 n=1 Tax=Zancudom... [more]
A0A2I3BR88_MOUSE2.590e-662.86Exosome complex exonuclease RRP44 n=1 Tax=Mus musc... [more]
G5C9E4_HETGA2.790e-666.67Exosome complex exonuclease RRP44 n=1 Tax=Heteroce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49601contigH-elongata_contig49601:3865..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D8LH73
Preferred nameDIS3
KEGG koko:K12585
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000049,GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000278,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000465,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0000966,GO:0000967,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004527,GO:0004532,GO:0004540,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008408,GO:0008536,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016078,GO:0016604,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0016973,GO:0017016,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019899,GO:0022613,GO:0030847,GO:0031123,GO:0031125,GO:0031126,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0033621,GO:0034399,GO:0034427,GO:0034470,GO:0034471,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0042886,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051607,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071051,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0098772,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1905354,GO:1990251
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.8869417-CDS-H-elongata_contig49601:3864..40321622930816.8869417-CDS-H-elongata_contig49601:3864..4032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49601 3865..4032 +
1691679582.7531822-CDS-H-elongata_contig49601:3864..40321691679582.7531822-CDS-H-elongata_contig49601:3864..4032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49601 3865..4032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49601.12160.1prot_H-elongata_contig49601.12160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49601 3865..4032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49601.12160.1

>prot_H-elongata_contig49601.12160.1 ID=prot_H-elongata_contig49601.12160.1|Name=mRNA_H-elongata_contig49601.12160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSIVSQNLIGVM
FGVIVG
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mRNA from alignment at H-elongata_contig49601:3865..4032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49601.12160.1 ID=mRNA_H-elongata_contig49601.12160.1|Name=mRNA_H-elongata_contig49601.12160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig49601:3865..4032+ (Himanthalia elongata Himel1 dioecious)
ATGCATCGCAGCAAGGCTTTCTTCAAGAAGACGAGAAAAGGGAAGATACT
TCGCGTTGTCTCCGACCACTACTTACGCGACGATATTGGCTGCGGCTCTC
TCGCCGGCAAGCCAGTATCCATCGTGAGCCAGAACCTGATCGGAGTGATG
TTTGGTGTTATAGTCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig49601:3865..4032+

>mRNA_H-elongata_contig49601.12160.1 ID=mRNA_H-elongata_contig49601.12160.1|Name=mRNA_H-elongata_contig49601.12160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig49601:3865..4032+ (Himanthalia elongata Himel1 dioecious)
ATGCATCGCAGCAAGGCTTTCTTCAAGAAGACGAGAAAAGGGAAGATACT
TCGCGTTGTCTCCGACCACTACTTACGCGACGATATTGGCTGCGGCTCTC
TCGCCGGCAAGCCAGTATCCATCGTGAGCCAGAACCTGATCGGAGTGATG
TTTGGTGTTATAGTCGGAATGCATCGCAGCAAGGCTTTCTTCAAGAAGAC
GAGAAAAGGGAAGATACTTCGCGTTGTCTCCGACCACTACTTACGCGACG
ATATTGGCTGCGGCTCTCTCGCCGGCAAGCCAGTATCCATCGTGAGCCAG
AACCTGATCGGAGTGATGTTTGGTGTTATAGTCGGA
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