prot_H-elongata_contig49601.12159.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49601.12159.1
Unique Nameprot_H-elongata_contig49601.12159.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length188
Homology
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BLAST of mRNA_H-elongata_contig49601.12159.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.660e-51
Identity = 119/161 (73.91%), Postives = 139/161 (86.34%), Query Frame = 0 
Query:   28 PSATAVASSTSQLVTGRSASGVLENCIEAXXXXXXXXXXXXXXXXXXXXXXXGTFGKVPDVGLMKSVRTKAGQMGGDWGKLTAAFTGFTSLSTVIRGRNDQWDQVVGAAAAGAFLSRSKGPSGMVQGAATYGLFSLLFASQSKQDP-IDVVDVPVDAPRKK 187
            P A AVAS TS L TGR+ASGV+EN    XXXXXXXXXXXXXXXXXXXXXXX +FG+VPDVG +KSV+TKA +MGG+WG+L+AAFTGFTS+STVIRGRND+WDQV+GA  AGAFL+R+KGP GM QGAATYGLFSL+FA  S QD  +DVVD+PVDAP+ +
Sbjct:   57 PVAAAVAS-TSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDAPKTR 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49601.12159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH74_ECTSI3.660e-5173.91Mitochondrial import inner membrane translocase su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 58..162
e-value: 1.2E-11
score: 45.0
NoneNo IPR availableTMHMMTMhelixcoord: 61..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49601contigH-elongata_contig49601:966..3473 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49601.12159.1mRNA_H-elongata_contig49601.12159.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49601 740..3540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49601.12159.1 ID=prot_H-elongata_contig49601.12159.1|Name=mRNA_H-elongata_contig49601.12159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MEKHPLKHRVRPLNEGWQHRASGQRIRPSATAVASSTSQLVTGRSASGVL
ENCIEACVNTLGSFVGGTITGCIIGAFVGGTFGKVPDVGLMKSVRTKAGQ
MGGDWGKLTAAFTGFTSLSTVIRGRNDQWDQVVGAAAAGAFLSRSKGPSG
MVQGAATYGLFSLLFASQSKQDPIDVVDVPVDAPRKK*
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