prot_H-elongata_contig49399.12129.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49399.12129.1
Unique Nameprot_H-elongata_contig49399.12129.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length243
Homology
[Close]
BLAST of mRNA_H-elongata_contig49399.12129.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 3.070e-33
Identity = 85/157 (54.14%), Postives = 96/157 (61.15%), Query Frame = 0 
Query:    1 EWTACLGHASIAAAVAVAEKSFIAWKALASDALVKQRRAAQFVRGARAKGGGREGGHGARNRCEEAARELAECCEEEGFMKYMLARDAWTGFEGASTSSAGTPERAAXXXXXXXXXTGDVP----IPAGLEASGRRELMESSLVLLWRARHLRDTGG 153
            EW ACLGHASIAAAV  AEK+F AWKALA +AL K RR A    G               + CE AAR+LAECCEEE FMK+MLARD W G E AST++A     AA         T        +PAGLEA GRR L+ESSL LL RA+ LR+TGG
Sbjct: 2462 EWAACLGHASIAAAVGAAEKAFSAWKALAEEALAKARREALRGGGKXXXXXXXXXXXXGLDACETAARDLAECCEEEAFMKFMLARDVWPGAEPASTATASAAGGAASVTAAGPAPTAATAPAARVPAGLEAGGRRRLLESSLSLLQRAQRLRETGG 2618
[Close]
BLAST of mRNA_H-elongata_contig49399.12129.1 vs. uniprot
Match: A0A6H5KF24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF24_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.990e-29
Identity = 94/179 (52.51%), Postives = 105/179 (58.66%), Query Frame = 0 
Query:    1 EWTACLGHASIAAAVAVAEKSFIAWKALASDALVKQRRAAQFVRGARAKGGGREGGHGAR-----------NRCEEAARELAECCEEEGFMKYMLARDAWTGFEGASTSSAGTPERAAXXXXXXXXXTGDVP---------------IPAGLEASGRRELMESSLVLLWRARHLRDTGG 153
            EW ACLGHASIAAAV  AEK F AWKALA +AL K RR  +  RG         GG G             + CE AAR+LAECCEEE FMK+MLARD W G E AST++A       XXXXXXXXX                    +PAGLEA GRR L+ESSL LL RA+ LR+TGG
Sbjct:  886 EWAACLGHASIAAAVGAAEKGFSAWKALAEEALAKARR--EVFRG---------GGKGXXXXXXXXXXXXVDACETAARDLAECCEEEAFMKFMLARDVWPGAELASTTTASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAARVPAGLEAGGRRRLLESSLTLLQRAQRLRETGG 1053
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49399.12129.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA3_ECTSI3.070e-3354.14PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KF24_9PHAE2.990e-2952.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49399contigH-elongata_contig49399:267..1494 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49399.12129.1mRNA_H-elongata_contig49399.12129.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49399 267..1494 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49399.12129.1 ID=prot_H-elongata_contig49399.12129.1|Name=mRNA_H-elongata_contig49399.12129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
EWTACLGHASIAAAVAVAEKSFIAWKALASDALVKQRRAAQFVRGARAKG
GGREGGHGARNRCEEAARELAECCEEEGFMKYMLARDAWTGFEGASTSSA
GTPERAAAETTTTTTTTGDVPIPAGLEASGRRELMESSLVLLWRARHLRD
TGGTMGLAYSTRACRRERLHRRRRRRSGCSPSSPKELSRGVGRVPRKTGS
DAAAGSAGGGGGDDEEKDRWESSSSSGRSPKRHKLWITGSGGG
back to top