prot_H-elongata_contig49219.12107.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49219.12107.1
Unique Nameprot_H-elongata_contig49219.12107.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length695
Homology
BLAST of mRNA_H-elongata_contig49219.12107.1 vs. uniprot
Match: A0A6H5L2L7_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L7_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 6.780e-58
Identity = 188/557 (33.75%), Postives = 246/557 (44.17%), Query Frame = 0
Query:  179 GSGGEPGVVPCSAAVIDGGSLRIDQAKWAGFAIDQSESVLIAVDSLISEVDERNRALLAGDLESRALQVTAWRTCTIQTTDRKGFLTPGVQPR----LELPPERPLTPTSGDTDMDAVVPETLVRLVRECCLSARCSSGDSNAPCAGGVEGV--STNFGFGQQCASELLGKFLDLGAS---------------RVDGKVHSTTTRLSEGFRGSVCTRTLCVECERDRVDRDTFMELVLPPHLPRPSDSNHKP-----HEPPAARSTSSPE----SITLAELVEATLGSESLVGNNKLWCRFCRQQTEAERRSTLHCCPRLLAIHLRPEVDGMS---IGRAESAWTSALGPHKVV----RGG-GNCCARGGSALIERVMTIQGIAKCQFH----DAMRDRAAASHTDYAHGVTGDEPRSKRKGVFQLPNPEPSGEVVYDLVGIILHQGRSLRSGHYTF-VRHVIQDRVPGGSKNITDAGTLRHRVMKAEKTQSCSFQAFQGQDVQEKDQSLLPLDGNLVIFDDASVRWLSPEEERFILNCGGSPRGFGDAFLVFYMRR 692
            GS G     P + A   G +L    A        Q   VL+A++ ++ E++ RNRAL    L +   Q         ++T      T   + +     +  P RP   T     ++++ P +LV L+    LSA        A   GG  G   ST+FG GQ C SELLGKFL L                  R  G   S+   L++ FRG++C RTLCVECERDR  R+ F EL LPP LP      H P        PAA +   P       T+  L++     ESL GNNK+WC  CRQ TEAERRS++H  P LLA+H+RP     S   +     A  S   P  VV    RG  G   A      IER + ++  A+CQFH    ++                TG           QL +   SG++ YDL+G ILHQG++L SGHYTF +     D     ++          R  +A   Q        G    + D           +FDDA+VRWLS EEER +L   G   GFGD FLVFY RR
Sbjct:   20 GSEGVSSTPPAADAAPAGAALAGTAAPVGRETGTQRNPVLVALEQVLGEMETRNRALFQQQLVAAGSQTAVSPPAEPESTSSGA--TSSAESKTCQWFDQTPLRPSASTGEGVRVESIAPTSLVELIHGGWLSA------DRARLGGGGAGTTGSTDFGTGQACVSELLGKFLGLVVDDXXXXXXXXXXXXXXRSGGTHSSSFCGLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLP----PQHAPPLTAQRAIPAAENDGGPSLRGRHRTIQTLIDGVFERESLAGNNKVWCEACRQWTEAERRSSVHSPPGLLALHVRPGTRKRSSPCLYPKALARASGGAPDSVVGDVRRGADGRLPAGSREEAIERTLVVRKAARCQFHGGGVNSXXXXXXXXXXXSVDSCTG-----------QLCD---SGDIFYDLIGAILHQGQTLASGHYTFAINAAAGDWASFLAQQXXXXXXXADRDNRALVQQGPPGATAAGSTYGKPD---------FALFDDATVRWLSLEEERAVLRGDGG--GFGDPFLVFYARR 539          
BLAST of mRNA_H-elongata_contig49219.12107.1 vs. uniprot
Match: D7FM48_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM48_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.440e-41
Identity = 184/646 (28.48%), Postives = 230/646 (35.60%), Query Frame = 0
Query:   92 VSQLEVTSGGAAAPLRYLSSSPQT--SPPFVGLANLGETCYINVVVQALVACSRAMKLSTERSRACDAERVAERDIIYRESVLAAASPHGSGGEPGVVPCSAAVIDGGSLRIDQAKWAGFAIDQSESVLIAVDSLISEVDERNRALLAGDLESRALQVTAWRTCTIQTTDRKGFLTPG---VQPRLELPPERPLTPTSGDTDMDAVVPETLVRLVRECCLSA-RCSSGDSNAPCAGGVEGVSTNFGFGQQCASELLGKFLDL---------------GASRVDGKVHSTTTRLSEGFRGSVCTRTLCVECERDRVDRDTFMELVLPPHLPRPSDSNHKPHEPP--------AARSTSSPE----SITLAELVEATLGSESLVGNNKLWCRFCRQQTEAERRSTLHCCPRLLAIHLRPEVDGMSIGRAESAWTSALGPHKVVRGGGNCCARGGSALIERVMTIQGIAKCQFHDAMRDRAAASHTDYAHGVTGDEPRSKRKGVFQLPNPEPSGEVVYDLVGIILHQGRSLRSGHYTFVRHVIQDRVPGGSKNITDAGTLRHRVMKAEKT------------QSCSFQAFQGQDVQEKDQSLLPLDGNLVIFDDASVRWLSPEEERFILNCGGSPRGFGDAFLVFYMRR 692
            +S+  +   G  AP  +    P +  SPPFVGL NLGETCY+N V+QAL AC     L++ R        V                  GS G     P + A   G +        AG    Q   VL A++ ++ E++ RNRAL    L +   Q         ++T      +P     QP  +  P RP   T     ++A+ P  LV L+R   LSA R   G   A   G     ST FG GQ C SELLGKFL L               G  R  G   S+   L++ FRG++C RTLCVECERDR  R+ F EL LPP LP P       H PP        AA +   P       T+  LV+     ESL GNNKL                                                                                C                                         SG+V YDL+G+ILHQG++L SGHYTF  H       G S +  +                           +C    F                    +FDDA+V WLSPEEER +L  GG    FGD FLVFY RR
Sbjct:  108 LSETCLDRAGVLAPAAWTIERPSSGPSPPFVGLKNLGETCYVNAVLQALTACHGV--LTSSRGGGGGWHDVGS---------------EGSEGSCSTPPAADAAPAGAASEGTAVLVAGVTGTQRNPVLAALEQVLGEMETRNRALSQQQLVAFGSQTAVSSPAEPESTGSGATSSPESKTCQP-YDQTPLRPSASTGEGVLVEAIAPTFLVELIRGGWLSADRSRLGGGGAGATG-----STEFGTGQACVSELLGKFLGLVVDDGGSGATSLGGVGGRRSGGSHSSSFCCLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPPQ------HAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLVDGVFEGESLAGNNKL--------------------------------------------------------------------------------CD----------------------------------------SGDVFYDLIGVILHQGQTLASGHYTFALHA----AAGDSASFLEXXXXXXXXXXXXXXXXXXXXXXXXXGSTCGKPGF-------------------ALFDDATVGWLSPEEERAVLRGGGGV--FGDPFLVFYARR 579          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49219.12107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2L7_9PHAE6.780e-5833.75USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM48_ECTSI1.440e-4128.48USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028881PAN2 domainPFAMPF13423UCH_1coord: 351..592
e-value: 7.0E-12
score: 45.6
NoneNo IPR availableGENE3D3.90.70.10coord: 348..475
e-value: 4.6E-12
score: 47.6
NoneNo IPR availableGENE3D3.90.70.10coord: 104..172
e-value: 1.0E-6
score: 30.2
NoneNo IPR availablePANTHERPTHR24006FAMILY NOT NAMEDcoord: 105..690
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 573..591
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 120..692
score: 18.316
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 116..693

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49219contigH-elongata_contig49219:1054..3315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49219.12107.1mRNA_H-elongata_contig49219.12107.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49219 355..3751 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49219.12107.1 ID=prot_H-elongata_contig49219.12107.1|Name=mRNA_H-elongata_contig49219.12107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=695bp
MPPSAGEERKYPGSSTTTSAIIPYNASAWEFNSSAVSLDPTLAPSGSTHR
PVTDAMAQFAASKISPSGENWAGGRPRARLRLSLENRRTLPVSQLEVTSG
GAAAPLRYLSSSPQTSPPFVGLANLGETCYINVVVQALVACSRAMKLSTE
RSRACDAERVAERDIIYRESVLAAASPHGSGGEPGVVPCSAAVIDGGSLR
IDQAKWAGFAIDQSESVLIAVDSLISEVDERNRALLAGDLESRALQVTAW
RTCTIQTTDRKGFLTPGVQPRLELPPERPLTPTSGDTDMDAVVPETLVRL
VRECCLSARCSSGDSNAPCAGGVEGVSTNFGFGQQCASELLGKFLDLGAS
RVDGKVHSTTTRLSEGFRGSVCTRTLCVECERDRVDRDTFMELVLPPHLP
RPSDSNHKPHEPPAARSTSSPESITLAELVEATLGSESLVGNNKLWCRFC
RQQTEAERRSTLHCCPRLLAIHLRPEVDGMSIGRAESAWTSALGPHKVVR
GGGNCCARGGSALIERVMTIQGIAKCQFHDAMRDRAAASHTDYAHGVTGD
EPRSKRKGVFQLPNPEPSGEVVYDLVGIILHQGRSLRSGHYTFVRHVIQD
RVPGGSKNITDAGTLRHRVMKAEKTQSCSFQAFQGQDVQEKDQSLLPLDG
NLVIFDDASVRWLSPEEERFILNCGGSPRGFGDAFLVFYMRRDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028881PAN2_dom
IPR018200USP_CS
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf