prot_H-elongata_contig48966.12067.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48966.12067.1
Unique Nameprot_H-elongata_contig48966.12067.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length350
Homology
BLAST of mRNA_H-elongata_contig48966.12067.1 vs. uniprot
Match: A0A6H5JVH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH6_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.550e-94
Identity = 192/389 (49.36%), Postives = 222/389 (57.07%), Query Frame = 0
Query:    1 MDPRSTWALGEFRETPIELRLQDSGRGSSSVEDSTGQTGSLLGIAKKATPVRRI------------------------------------AYQGERLIGLLVVKFDASSA-GAARLDRWRKFGHDLNVELEITTEAVATTGATFASSDEPSLWRDYEGRENAHDRGVLTRSNRVLGIHRETPATRSGPGGLSYALDVEIQVPVEFLGQAVVLEALVSPTSVAQTKDADAGNPAGVSLFDRAGE------------------------RRGGAGGDFATRLDGLFALSRIAPVRLPVTRCFLPLRVVQPIAVTSRSSPASSS----FVGSTASSSSPAALVGRSLVALELKNEHPVARVTVHDAEVHVDATARCGERASSLGFSAPGKAG 324
            MDP+S WALGEFR+ PIELR+ +                                                                   AYQGERL GLLVVKFD +SA G  R  RWR+FG +LNVELEITTEAVA+ G  F S +EPSLWRDYEGREN  DRGVL RSNR + +  E    +SG   L YALD+E+QVPV+ LGQ VVLEALVSP S  +++  +    A     D +G                         RR G GGDFATRLDGLFALSR+APVRLPV RCFLPLRVVQPI VTSRS P +SS             + A  +GR LVALE++N+HP A +TVHD EVHVDATARCG+R+SS GFSAPGKAG
Sbjct:    1 MDPKSEWALGEFRDPPIELRILEHRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGRVLPAWTAYQGERLTGLLVVKFDVASADGEDRRSRWRQFGTELNVELEITTEAVASAGTAFLS-EEPSLWRDYEGRENTRDRGVLARSNRTVSLSPEGSQLQSG-AELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTRGVAAGPSRDTSGASSGAXXXXXXXXXXXXXXXXXXXGRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPFTSSPAAXXXXXXXXXGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 387          
BLAST of mRNA_H-elongata_contig48966.12067.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.070e-80
Identity = 158/279 (56.63%), Postives = 184/279 (65.95%), Query Frame = 0
Query:   75 GAARLDRWRKFGHDLNVELEITTEAVATTGATFASSDEPSLWRDYEGRENAHDRGVLTRSNRVLGIHRETPATRSGPGGLSYALDVEIQVPVEFLGQAVVLEALVSPTSVAQTKDADAGNPAGVSLFDRAGE------------------------RRGGAGGDFATRLDGLFALSRIAPVRLPVTRCFLPLRVVQPIAVTSRSSPASSSFVGSTAS-----SSSPAALVGRSLVALELKNEHPVARVTVHDAEVHVDATARCGERASSLGFSAPGKAG 324
            G  R  RWR+FG +LNVELEITTEAVA+ G  F S +EPSLWRDYEGRENA DRGVL RSNR + +  E P        L YALD+E+QVPV+ LGQ VVLEALVSP S  +++  +    A     D +G                         RR G GG+FATRLDGLFALSR+APVRLPV RCFLPLRVVQPI VTSRS P++SS              + A  +GR LVALE++N+HP A +TVHD EVHVDATARCG+R+SS GFSAPGKAG
Sbjct:   20 GEDRRSRWRQFGSELNVELEITTEAVASAGTAFLS-EEPSLWRDYEGRENARDRGVLARSNRTVSLSPEAPPPLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTPGVAAAPSKDTSGASCGAGGXXXXXXXXXXXXXXXXXXRRRGIGGNFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSTSSXXXXXXXXXXXXGGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48966.12067.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVH6_9PHAE1.550e-9449.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI50_ECTSI1.070e-8056.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48966contigH-elongata_contig48966:1191..3845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48966.12067.1mRNA_H-elongata_contig48966.12067.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48966 925..3845 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48966.12067.1 ID=prot_H-elongata_contig48966.12067.1|Name=mRNA_H-elongata_contig48966.12067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp
MDPRSTWALGEFRETPIELRLQDSGRGSSSVEDSTGQTGSLLGIAKKATP
VRRIAYQGERLIGLLVVKFDASSAGAARLDRWRKFGHDLNVELEITTEAV
ATTGATFASSDEPSLWRDYEGRENAHDRGVLTRSNRVLGIHRETPATRSG
PGGLSYALDVEIQVPVEFLGQAVVLEALVSPTSVAQTKDADAGNPAGVSL
FDRAGERRGGAGGDFATRLDGLFALSRIAPVRLPVTRCFLPLRVVQPIAV
TSRSSPASSSFVGSTASSSSPAALVGRSLVALELKNEHPVARVTVHDAEV
HVDATARCGERASSLGFSAPGKAGRGGASARARRRMSGGAATGGVAAPLE
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