mRNA_H-elongata_contig48966.12067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48966.12067.1
Unique NamemRNA_H-elongata_contig48966.12067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig48966.12067.1 vs. uniprot
Match: A0A6H5JVH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH6_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 1.470e-93
Identity = 192/389 (49.36%), Postives = 222/389 (57.07%), Query Frame = 3 
Query:  267 MDPRSTWALGEFRETPIELRLQDSGRGSSSVEDSTGQTGSLLGIAKKATPVRRI------------------------------------AYQGERLIGLLVVKFDASSA-GAARLDRWRKFGHDLNVELEITTEAVATTGATFASSDEPSLWRDYEGRENAHDRGVLTRSNRVLGIHRETPATRSGPGGLSYALDVEIQVPVEFLGQAVVLEALVSPTSVAQTKDADAGNPAGVSLFDRAGE------------------------RRGGAGGDFATRLDGLFALSRIAPVRLPVTRCFLPLRVVQPIAVTSRSSPASSS----FVGSTASSSSPAALVGRSLVALELKNEHPVARVTVHDAEVHVDATARCGERASSLGFSAPGKAG 1238
            MDP+S WALGEFR+ PIELR+ +                                                                   AYQGERL GLLVVKFD +SA G  R  RWR+FG +LNVELEITTEAVA+ G  F S +EPSLWRDYEGREN  DRGVL RSNR + +  E    +SG   L YALD+E+QVPV+ LGQ VVLEALVSP S  +++  +    A     D +G                         RR G GGDFATRLDGLFALSR+APVRLPV RCFLPLRVVQPI VTSRS P +SS             + A  +GR LVALE++N+HP A +TVHD EVHVDATARCG+R+SS GFSAPGKAG
Sbjct:    1 MDPKSEWALGEFRDPPIELRILEHRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGRVLPAWTAYQGERLTGLLVVKFDVASADGEDRRSRWRQFGTELNVELEITTEAVASAGTAFLS-EEPSLWRDYEGRENTRDRGVLARSNRTVSLSPEGSQLQSG-AELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTRGVAAGPSRDTSGASSGAXXXXXXXXXXXXXXXXXXXGRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPFTSSPAAXXXXXXXXXGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 387
[Close]
BLAST of mRNA_H-elongata_contig48966.12067.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.840e-79
Identity = 158/279 (56.63%), Postives = 184/279 (65.95%), Query Frame = 3 
Query:  489 GAARLDRWRKFGHDLNVELEITTEAVATTGATFASSDEPSLWRDYEGRENAHDRGVLTRSNRVLGIHRETPATRSGPGGLSYALDVEIQVPVEFLGQAVVLEALVSPTSVAQTKDADAGNPAGVSLFDRAGE------------------------RRGGAGGDFATRLDGLFALSRIAPVRLPVTRCFLPLRVVQPIAVTSRSSPASSSFVGSTAS-----SSSPAALVGRSLVALELKNEHPVARVTVHDAEVHVDATARCGERASSLGFSAPGKAG 1238
            G  R  RWR+FG +LNVELEITTEAVA+ G  F S +EPSLWRDYEGRENA DRGVL RSNR + +  E P        L YALD+E+QVPV+ LGQ VVLEALVSP S  +++  +    A     D +G                         RR G GG+FATRLDGLFALSR+APVRLPV RCFLPLRVVQPI VTSRS P++SS              + A  +GR LVALE++N+HP A +TVHD EVHVDATARCG+R+SS GFSAPGKAG
Sbjct:   20 GEDRRSRWRQFGSELNVELEITTEAVASAGTAFLS-EEPSLWRDYEGRENARDRGVLARSNRTVSLSPEAPPPLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTPGVAAAPSKDTSGASCGAGGXXXXXXXXXXXXXXXXXXRRRGIGGNFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSTSSXXXXXXXXXXXXGGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48966.12067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVH6_9PHAE1.470e-9349.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI50_ECTSI1.840e-7956.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48966contigH-elongata_contig48966:925..3845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003550.1
Hectar predicted targeting categoryother localisation
Exons5
Model size1316
Cds size1050
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48966.12067.1prot_H-elongata_contig48966.12067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48966 1191..3845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.2514412-UTR-H-elongata_contig48966:924..11901622930805.2514412-UTR-H-elongata_contig48966:924..1190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48966 925..1190 +
1691679577.838151-UTR-H-elongata_contig48966:924..11901691679577.838151-UTR-H-elongata_contig48966:924..1190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48966 925..1190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.2687588-CDS-H-elongata_contig48966:1190..14101622930805.2687588-CDS-H-elongata_contig48966:1190..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 1191..1410 +
1691679577.8466413-CDS-H-elongata_contig48966:1190..14101691679577.8466413-CDS-H-elongata_contig48966:1190..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 1191..1410 +
1622930805.2853987-CDS-H-elongata_contig48966:1786..18481622930805.2853987-CDS-H-elongata_contig48966:1786..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 1787..1848 +
1691679577.8567374-CDS-H-elongata_contig48966:1786..18481691679577.8567374-CDS-H-elongata_contig48966:1786..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 1787..1848 +
1622930805.3083718-CDS-H-elongata_contig48966:2189..23901622930805.3083718-CDS-H-elongata_contig48966:2189..2390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 2190..2390 +
1691679577.8644516-CDS-H-elongata_contig48966:2189..23901691679577.8644516-CDS-H-elongata_contig48966:2189..2390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 2190..2390 +
1622930805.331623-CDS-H-elongata_contig48966:2631..28281622930805.331623-CDS-H-elongata_contig48966:2631..2828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 2632..2828 +
1691679577.8721514-CDS-H-elongata_contig48966:2631..28281691679577.8721514-CDS-H-elongata_contig48966:2631..2828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 2632..2828 +
1622930805.3479104-CDS-H-elongata_contig48966:3475..38451622930805.3479104-CDS-H-elongata_contig48966:3475..3845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 3476..3845 +
1691679577.8797657-CDS-H-elongata_contig48966:3475..38451691679577.8797657-CDS-H-elongata_contig48966:3475..3845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48966 3476..3845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48966.12067.1

>prot_H-elongata_contig48966.12067.1 ID=prot_H-elongata_contig48966.12067.1|Name=mRNA_H-elongata_contig48966.12067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp
MDPRSTWALGEFRETPIELRLQDSGRGSSSVEDSTGQTGSLLGIAKKATP
VRRIAYQGERLIGLLVVKFDASSAGAARLDRWRKFGHDLNVELEITTEAV
ATTGATFASSDEPSLWRDYEGRENAHDRGVLTRSNRVLGIHRETPATRSG
PGGLSYALDVEIQVPVEFLGQAVVLEALVSPTSVAQTKDADAGNPAGVSL
FDRAGERRGGAGGDFATRLDGLFALSRIAPVRLPVTRCFLPLRVVQPIAV
TSRSSPASSSFVGSTASSSSPAALVGRSLVALELKNEHPVARVTVHDAEV
HVDATARCGERASSLGFSAPGKAGRGGASARARRRMSGGAATGGVAAPLE
back to top

mRNA from alignment at H-elongata_contig48966:925..3845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48966.12067.1 ID=mRNA_H-elongata_contig48966.12067.1|Name=mRNA_H-elongata_contig48966.12067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2921bp|location=Sequence derived from alignment at H-elongata_contig48966:925..3845+ (Himanthalia elongata Himel1 dioecious)
GCTGGAAAGGGCCATATAGAAACCGACCAAACCGCAAAGGCAACGAAAGG
AACGTTTCCTCCGGGACCCATATTGTGCCTGACTTTCTTGTCTTCCAAGG
CTTTGGCCAGCGAGAAAGAGTTCCGCAAACGGTTGTATTAAGAACACAAA
AGAAAAGTTGCCGACAATCTAACACCCCCTGGTGTCCAGCAGTACCGATA
TTATTGCACCGTTGACCCATCTGCTGTACATCTTGCGATTGCATTATTCC
CCACGGTTTGTCGGGGATGGACCCCAGATCGACCTGGGCCCTCGGGGAAT
TCCGAGAAACGCCGATAGAACTGCGTCTACAAGACTCTGGACGAGGCAGC
TCTAGCGTGGAGGACTCCACAGGGCAAACGGGGTCACTGCTCGGGATTGC
CAAGAAGGCCACTCCGGTTAGACGAATTGCCTACCAAGGGGAACGTCTGA
TCGGTCTGCTGGTGGTGAAATTCGACGCCAGCTCCGGTGAGGATTGGATC
TATCCTGTCGTGTCATCCACAAGTTGTCTATATACTGTTGCTGCAGATCA
AATGTGTCCCCAGTTTTCAGTTTTCCTTCATTCAAATAGCGTCCGCATCC
AACATTCCGGCGGAGACATTCTAGACACGACAAGGGAATGCACTTGCTCG
AGCCTGCGCGCGGTGCACCCTGCGCAGCACAAGCACACATCAATTCAGTA
CGCTACTTCTGTGTATGAAAGCGCCCGTCTACGATGGTGACAGTAATTCG
ATCTGGAGATACAGGAATGTACCAGCTTTTTTTATACGAACCACGCCACG
CGTTTATCGAAATGGACCCCCCCGGCCGCGTGCCGTTGTTACCCATCCTC
TCCCTTCCTTAGCTGGCGCCGCTCGGCTAGACCGTTGGCGGAAATTTGGA
CACGACCTTAACGTTGAGCTGGAGGTGAGCTGAATGCTGCGTGAGACGAG
TGGGGACCCATACTATGAAATATGTTGTTCTTGTTTATTGATGGCCGGGC
GGTATCAAAGGACGAATTATCTTGAGGGCGCAGGAGAGCAGGGATTGGGA
CGTCTTTATAGTCGACCGCTTATCCGGCGGATCTCTGTAGGAGGACGAGA
GGGTTGTATGCGCTTCCCCCCCTCAACTGTTAGACAGAGCTAGTATGTGG
AAACTCTTCCCGATGGCACACACTGTGCATGATCCCTTTTTTTTTTTAAA
TGTCCACTGAACTCCCCTCTCATGGCTTGGCTCCCTTTTTTTTGCTGCAT
TGGCGCTTCGATTAGATTACCACGGAGGCAGTAGCGACAACAGGAGCTAC
GTTCGCTTCCTCCGATGAACCGTCACTGTGGCGAGACTACGAGGGACGTG
AAAACGCTCACGACAGGGGGGTTCTGACTCGCAGTAACCGCGTCCTCGGC
ATTCATCGGGAAACCCCCGCCACTAGAAGTGGGCCGGGGGGACTCTCCTA
CGCGCTTGATGTCGAGGTGAGGATTTTCGGAAGCGAGGAGGGGCGGGGGG
CAGAGGCGGGGGGGGGGAGGGAGGGAGGGGATAATCTGGCCCATGGGTAA
CTTAAGCAGGAAGCAATCATTGTTGGCCGCCGACTTCGACACTCCCCCTC
ATGCATAGCGCTGGCGAAACTCCACTGCTTCCCCCTGTTATTACTCCACA
CCGAACGGCTAAATTACAGTATTACTGCTGCCCCACACTCTTCGTGGCTG
CCCACAGATTCAAGTCCCCGTGGAGTTCCTTGGACAAGCGGTAGTTCTCG
AGGCGCTCGTGTCCCCGACGTCGGTGGCTCAGACCAAAGACGCCGACGCT
GGAAATCCCGCTGGTGTGAGCTTATTCGACCGTGCGGGGGAACGCCGAGG
GGGCGCGGGCGGGGACTTCGCCACCCGGCTGGACGGCTTGTTCGCTCTCA
GTAGGTGCGGGATTCGTCGCCTGTTCGCTTGCCGCCCTCCTAGCTGCACG
GGTTGCGATGTTAGCAAAGGTCCGGCCGAGCGCGTGGTGTACAGCAGGGC
ACGTTTGGGGGCTCTCGAGGTTTAATGCTCCGTCTGTCTGCGCTGCTTTT
GCGGTGTGGCGTGCGAGTGCGTGCGGTACGATGAAACGGAATGGAGCGTT
CTTGTAAATGTTTCCTTTTTGATTCGGAAGAGGACGAGATTCATGTTACC
CAACGGACCGCCTTGAACGATATATGTCGCCTGGTTTCCATCTCCCTCTC
CTTCCCCTCCCTCGCCTCCCCCGTCCCTTCGATAAAAAAAAAAAAATCTG
CATCGATCACCGTGTTGATATCGTTGATGAGGCAGGACAAAAATTCCTTT
GACCGATGCCCTCTCAAGAGCCATCCGTATCCGTAGGCGACGACGACATT
GCTGTTTTTACCGCCTCGTTCGCATCCCCTTCTTGCGACTCTAGCAAGGC
ACTGCATTCCGCCCTCCCTTCTCAAAATATAGCTAGAGACATAGCTCCAC
ATATATACATAAATACATACATTCATAGATGCGTGCTAGAGAAATATACA
TGCCACATCGCCGATTCGAATCATCCGAAAATGACGATGACGACGACGCA
GGATAGCTCCGGTGCGGCTGCCGGTGACACGCTGCTTCTTGCCTCTGCGC
GTGGTACAGCCCATCGCCGTCACCAGCCGATCCTCGCCGGCCTCCTCTTC
TTTCGTCGGATCCACGGCTTCCTCATCCTCCCCCGCGGCCCTTGTGGGGC
GGAGCCTGGTCGCGCTCGAGCTGAAGAACGAGCACCCCGTGGCGAGAGTC
ACGGTGCACGACGCCGAGGTTCACGTGGACGCCACCGCGCGGTGCGGCGA
GCGGGCGTCGTCTCTGGGATTTTCTGCGCCCGGGAAGGCGGGAAGGGGCG
GGGCATCCGCGCGCGCAAGACGAAGGATGTCGGGAGGGGCGGCTACCGGA
GGGGTGGCAGCTCCGCTAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48966:925..3845+

>mRNA_H-elongata_contig48966.12067.1 ID=mRNA_H-elongata_contig48966.12067.1|Name=mRNA_H-elongata_contig48966.12067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig48966:925..3845+ (Himanthalia elongata Himel1 dioecious)
ATGGACCCCAGATCGACCTGGGCCCTCGGGGAATTCCGAGAAACGCCGAT
AGAACTGCGTCTACAAGACTCTGGACGAGGCAGCTCTAGCGTGGAGGACT
CCACAGGGCAAACGGGGTCACTGCTCGGGATTGCCAAGAAGGCCACTCCG
GTTAGACGAATTGCCTACCAAGGGGAACGTCTGATCGGTCTGCTGGTGGT
GAAATTCGACGCCAGCTCCGATGGACCCCAGATCGACCTGGGCCCTCGGG
GAATTCCGAGAAACGCCGATAGAACTGCGTCTACAAGACTCTGGACGAGG
CAGCTCTAGCGTGGAGGACTCCACAGGGCAAACGGGGTCACTGCTCGGGA
TTGCCAAGAAGGCCACTCCGGTTAGACGAATTGCCTACCAAGGGGAACGT
CTGATCGGTCTGCTGGTGGTGAAATTCGACGCCAGCTCCGCTGGCGCCGC
TCGGCTAGACCGTTGGCGGAAATTTGGACACGACCTTAACGTTGAGCTGG
AGCTGGCGCCGCTCGGCTAGACCGTTGGCGGAAATTTGGACACGACCTTA
ACGTTGAGCTGGAGATTACCACGGAGGCAGTAGCGACAACAGGAGCTACG
TTCGCTTCCTCCGATGAACCGTCACTGTGGCGAGACTACGAGGGACGTGA
AAACGCTCACGACAGGGGGGTTCTGACTCGCAGTAACCGCGTCCTCGGCA
TTCATCGGGAAACCCCCGCCACTAGAAGTGGGCCGGGGGGACTCTCCTAC
GCGCTTGATGTCGAGATTACCACGGAGGCAGTAGCGACAACAGGAGCTAC
GTTCGCTTCCTCCGATGAACCGTCACTGTGGCGAGACTACGAGGGACGTG
AAAACGCTCACGACAGGGGGGTTCTGACTCGCAGTAACCGCGTCCTCGGC
ATTCATCGGGAAACCCCCGCCACTAGAAGTGGGCCGGGGGGACTCTCCTA
CGCGCTTGATGTCGAGATTCAAGTCCCCGTGGAGTTCCTTGGACAAGCGG
TAGTTCTCGAGGCGCTCGTGTCCCCGACGTCGGTGGCTCAGACCAAAGAC
GCCGACGCTGGAAATCCCGCTGGTGTGAGCTTATTCGACCGTGCGGGGGA
ACGCCGAGGGGGCGCGGGCGGGGACTTCGCCACCCGGCTGGACGGCTTGT
TCGCTCTCAGTAGATTCAAGTCCCCGTGGAGTTCCTTGGACAAGCGGTAG
TTCTCGAGGCGCTCGTGTCCCCGACGTCGGTGGCTCAGACCAAAGACGCC
GACGCTGGAAATCCCGCTGGTGTGAGCTTATTCGACCGTGCGGGGGAACG
CCGAGGGGGCGCGGGCGGGGACTTCGCCACCCGGCTGGACGGCTTGTTCG
CTCTCAGTAGGATAGCTCCGGTGCGGCTGCCGGTGACACGCTGCTTCTTG
CCTCTGCGCGTGGTACAGCCCATCGCCGTCACCAGCCGATCCTCGCCGGC
CTCCTCTTCTTTCGTCGGATCCACGGCTTCCTCATCCTCCCCCGCGGCCC
TTGTGGGGCGGAGCCTGGTCGCGCTCGAGCTGAAGAACGAGCACCCCGTG
GCGAGAGTCACGGTGCACGACGCCGAGGTTCACGTGGACGCCACCGCGCG
GTGCGGCGAGCGGGCGTCGTCTCTGGGATTTTCTGCGCCCGGGAAGGCGG
GAAGGGGCGGGGCATCCGCGCGCGCAAGACGAAGGATGTCGGGAGGGGCG
GCTACCGGAGGGGTGGCAGCTCCGCTAGAGGATAGCTCCGGTGCGGCTGC
CGGTGACACGCTGCTTCTTGCCTCTGCGCGTGGTACAGCCCATCGCCGTC
ACCAGCCGATCCTCGCCGGCCTCCTCTTCTTTCGTCGGATCCACGGCTTC
CTCATCCTCCCCCGCGGCCCTTGTGGGGCGGAGCCTGGTCGCGCTCGAGC
TGAAGAACGAGCACCCCGTGGCGAGAGTCACGGTGCACGACGCCGAGGTT
CACGTGGACGCCACCGCGCGGTGCGGCGAGCGGGCGTCGTCTCTGGGATT
TTCTGCGCCCGGGAAGGCGGGAAGGGGCGGGGCATCCGCGCGCGCAAGAC
GAAGGATGTCGGGAGGGGCGGCTACCGGAGGGGTGGCAGCTCCGCTAGAG
back to top