mRNA_H-elongata_contig48907.12061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48907.12061.1
Unique NamemRNA_H-elongata_contig48907.12061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A6H5L7D8_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7D8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.350e-56
Identity = 107/162 (66.05%), Postives = 116/162 (71.60%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGL-----------GEVETGRMFSPAVDTIEAGAVASTRSDGSRALAGQSRLSLTVRLMKSKPFLVFLALILASIFLNQP 453
            VGSRICLSASEYHQETWQPSWTV+SLV+ALVAHMTE AVEIG+V+GATPSQKRKAAV+SRSF C ACGC H  FPED FP PKG            G     R    AV   EA A A TR      L G+SRLS TVRLM SKPFL+ L LI+AS+FLNQP
Sbjct:  129 VGSRICLSASEYHQETWQPSWTVASLVSALVAHMTEAAVEIGAVRGATPSQKRKAAVKSRSFVCAACGCCHDAFPEDRFPIPKGFDKGKKAGAGADGSAGARREARVAVGVGEAPAAA-TRGG----LTGRSRLSWTVRLMTSKPFLLALTLIIASVFLNQP 285          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A4D9CVX3_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVX3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.200e-17
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEV 264
            VG+ ICLSA+ +HQETWQP WTV +LV+AL +HM  PAVE+G ++  +  +++  A RSR F C  CG  H  FP   F     +GEV
Sbjct:   81 VGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRIFRSLPEVGEV 167          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: W7TJJ9_9STRA (Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJJ9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.280e-17
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEV 264
            VG+ ICLSA+ +HQETWQP WTV +LV+AL +HM  PAVE+G ++  +  +++  A RSR F C  CG  H  FP   F     +GEV
Sbjct:  145 VGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEV 231          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A2V3INT9_9FLOR (Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT9_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 1.470e-13
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAV 294
            VG RICLS + +HQETWQPSW + +++TAL+  M  PA  +G++       +R+ A RS  F C  CG R    P DH P          G++ S A+
Sbjct:   84 VGKRICLSVTAHHQETWQPSWGIRTILTALIGFMPSPAEGVGALDY-PDDDRRRLARRSHLFHCGRCGSR----PVDHLPPMTQTCSPANGKIQSKAL 176          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A5J4Z378_PORPP (Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z378_PORPP)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-12
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKA-AVRSRSFECTACGCRHRFFPED 231
            VG+RICLS + +HQETWQPSW + +++TAL+  M   A  +GS+    P++ R+A A +S +F+C  CGC+ +   ED
Sbjct:   88 VGTRICLSITSHHQETWQPSWGIRTILTALIGFMPSKAEGLGSLN--FPAEDRRALAAKSIAFQCPICGCKVKELFED 163          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.730e-11
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAVDT 300
               R+CLS S++H ETW P W+VSS++T L + M E    +GS+   T +QKRK A  S    CT    R + FP+    + +   E E  R  SPA +T
Sbjct:   82 TNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLETQATLGSIS-TTDAQKRKYAAASLEANCTNATFR-KLFPDLVTLQEQRDKEQELLRKLSPAGET 179          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A7E4VBD2_PANRE (UBC core domain-containing protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VBD2_PANRE)

HSP 1 Score: 68.2 bits (165), Expect = 1.070e-10
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAV-EIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHF--------PKPKGLGEVE----------TGRMFSPAVDTIE 306
              ++ICLS S+YH ETWQPSW++ + + AL+A M+ P++  +GS++  +  Q++  A +S  + C AC C+     +DH         PKP+     E          T  + SPA +++E
Sbjct:   83 TNTKICLSISDYHPETWQPSWSIGTALVALIAFMSTPSLGAVGSIE-TSDEQRKILAKKSLIWTCNACDCKM----QDHLDQMKAVSAPKPEAGDAPEATKXXXXXXKTAEVPSPAANSVE 198          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: UPI00162E12E0 (probable ubiquitin-conjugating enzyme E2 33 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI00162E12E0)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-10
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   10 RICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRH--RFFPE 228
            RICLS S++H E+W P W+V+S++T L++ M + A+  GS+   T  +K++ A  SR++ C +  C H  + FPE
Sbjct:   13 RICLSMSDFHPESWNPMWSVASILTGLLSFMMDDALTTGSITS-TDGEKKRLAKASRAYNCESKKCLHFRKLFPE 86          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: F0XY27_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY27_AURAN)

HSP 1 Score: 64.7 bits (156), Expect = 3.360e-10
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   10 RICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFEC 192
            R+CLS S++H E+W P W+VS+++T L + M E +  +GSV+ ATP+Q+R+ A +S  F C
Sbjct:   85 RLCLSMSDFHPESWNPMWSVSTILTGLYSFMLESSPTLGSVE-ATPAQRRRFAAQSLEFNC 144          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: R7QED2_CHOCR (UBC core domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QED2_CHOCR)

HSP 1 Score: 67.0 bits (162), Expect = 4.250e-10
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 1
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVR-SRSFECTACGCRHRFFPEDHFPKPKGL---GEVETGRMFSPAVDT 300
            VG RICLS + +HQETWQPSW + +++TALV  M   A  +G++    P + R+   R S  F C  CG      P +  P  +      +    R+  P+VD+
Sbjct:  145 VGKRICLSVTAHHQETWQPSWGIRTILTALVGFMPSKAEGVGALD--YPDEDRRGLARKSHGFRCERCGA----LPVEQLPPREPCPPTSDALASRVDRPSVDS 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7D8_9PHAE4.350e-5666.05UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9CVX3_9STRA1.200e-1748.86UBC core domain-containing protein n=1 Tax=Nannoch... [more]
W7TJJ9_9STRA3.280e-1748.86Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannoch... [more]
A0A2V3INT9_9FLOR1.470e-1339.80Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Gracila... [more]
A0A5J4Z378_PORPP1.090e-1244.87Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Porphyr... [more]
A0A3F2RXI9_9STRA9.730e-1139.00UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A7E4VBD2_PANRE1.070e-1032.23UBC core domain-containing protein n=1 Tax=Panagre... [more]
UPI00162E12E01.390e-1040.00probable ubiquitin-conjugating enzyme E2 33 n=1 Ta... [more]
F0XY27_AURAN3.360e-1045.90UBC core domain-containing protein (Fragment) n=1 ... [more]
R7QED2_CHOCR4.250e-1035.58UBC core domain-containing protein n=1 Tax=Chondru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48907contigH-elongata_contig48907:2776..3237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue1.5e-45
Seed eggNOG ortholog2880.D8LFM3
Preferred nameUBE2J1
KEGG koko:K10578
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0000003,GO:0001817,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010556,GO:0010605,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031625,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032680,GO:0032879,GO:0032880,GO:0033157,GO:0033554,GO:0034645,GO:0034976,GO:0036211,GO:0036503,GO:0042035,GO:0042176,GO:0042177,GO:0042221,GO:0042534,GO:0043161,GO:0043170,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0044703,GO:0045861,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051223,GO:0051224,GO:0051239,GO:0051246,GO:0051248,GO:0051603,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070085,GO:0070201,GO:0070647,GO:0070861,GO:0070862,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903555,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0428@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-04_001690.1
Exons1
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.7865088-CDS-H-elongata_contig48907:2775..32371622930804.7865088-CDS-H-elongata_contig48907:2775..3237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48907 2776..3237 +
1691679577.6416934-CDS-H-elongata_contig48907:2775..32371691679577.6416934-CDS-H-elongata_contig48907:2775..3237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48907 2776..3237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48907.12061.1prot_H-elongata_contig48907.12061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48907 2776..3237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48907.12061.1

>prot_H-elongata_contig48907.12061.1 ID=prot_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPS
QKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAVDT
IEAGAVASTRSDGSRALAGQSRLSLTVRLMKSKPFLVFLALILASIFLNQ
PSR*
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mRNA from alignment at H-elongata_contig48907:2776..3237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48907.12061.1 ID=mRNA_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig48907:2776..3237+ (Himanthalia elongata Himel1 dioecious)
GTAGGCTCGAGAATATGCCTTTCGGCGAGCGAATATCACCAAGAAACCTG GCAGCCTTCGTGGACCGTGTCATCCCTCGTGACCGCCCTAGTCGCCCACA TGACCGAACCGGCGGTGGAGATCGGCTCCGTTCAGGGGGCGACGCCATCG CAGAAGCGGAAGGCGGCCGTGAGGTCGCGGAGCTTCGAGTGCACCGCGTG CGGGTGTCGGCACCGGTTCTTCCCGGAAGATCATTTCCCGAAGCCCAAAG GCTTGGGCGAGGTCGAGACCGGGCGGATGTTTTCGCCGGCCGTTGATACG ATCGAAGCAGGGGCTGTGGCAAGCACTCGCTCGGATGGTAGTCGCGCGTT GGCCGGGCAAAGCAGGCTGTCTCTGACGGTGCGGTTGATGAAGAGCAAGC CATTCCTGGTGTTTTTGGCGTTGATTCTTGCGAGCATCTTTCTGAACCAA CCGAGCCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig48907:2776..3237+

>mRNA_H-elongata_contig48907.12061.1 ID=mRNA_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig48907:2776..3237+ (Himanthalia elongata Himel1 dioecious)
GTAGGCTCGAGAATATGCCTTTCGGCGAGCGAATATCACCAAGAAACCTG
GCAGCCTTCGTGGACCGTGTCATCCCTCGTGACCGCCCTAGTCGCCCACA
TGACCGAACCGGCGGTGGAGATCGGCTCCGTTCAGGGGGCGACGCCATCG
CAGAAGCGGAAGGCGGCCGTGAGGTCGCGGAGCTTCGAGTGCACCGCGTG
CGGGTGTCGGCACCGGTTCTTCCCGGAAGATCATTTCCCGAAGCCCAAAG
GCTTGGGCGAGGTCGAGACCGGGCGGATGTTTTCGCCGGCCGTTGATACG
ATCGAAGCAGGGGCTGTGGCAAGCACTCGCTCGGATGGTAGTCGCGCGTT
GGCCGGGCAAAGCAGGCTGTCTCTGACGGTGCGGTTGATGAAGAGCAAGC
CATTCCTGGTGTTTTTGGCGTTGATTCTTGCGAGCATCTTTCTGAACCAA
CCGAGCCGATGAGTAGGCTCGAGAATATGCCTTTCGGCGAGCGAATATCA
CCAAGAAACCTGGCAGCCTTCGTGGACCGTGTCATCCCTCGTGACCGCCC
TAGTCGCCCACATGACCGAACCGGCGGTGGAGATCGGCTCCGTTCAGGGG
GCGACGCCATCGCAGAAGCGGAAGGCGGCCGTGAGGTCGCGGAGCTTCGA
GTGCACCGCGTGCGGGTGTCGGCACCGGTTCTTCCCGGAAGATCATTTCC
CGAAGCCCAAAGGCTTGGGCGAGGTCGAGACCGGGCGGATGTTTTCGCCG
GCCGTTGATACGATCGAAGCAGGGGCTGTGGCAAGCACTCGCTCGGATGG
TAGTCGCGCGTTGGCCGGGCAAAGCAGGCTGTCTCTGACGGTGCGGTTGA
TGAAGAGCAAGCCATTCCTGGTGTTTTTGGCGTTGATTCTTGCGAGCATC
TTTCTGAACCAACCGAGCCGATGA
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