prot_H-elongata_contig48829.12053.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48829.12053.1
Unique Nameprot_H-elongata_contig48829.12053.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length254
Homology
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BLAST of mRNA_H-elongata_contig48829.12053.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 4.930e-77
Identity = 136/267 (50.94%), Postives = 171/267 (64.04%), Query Frame = 0 
Query:    1 DQRYVGPVAALSDTLAKLPKLKVLDMSRCTLLGRAGHRYRGLIALGRAFAYQTKSCLTHLRISNNNLHSEAALILGGWCPAMRRLRYFDVSDRVGFAALCGSLANMLHLRTLLMRDVGIDDRGAEDLTAYVSSSVRLQTLDISKNQMQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPHAANLTELDLSSNGLTVG-------------VKDSLVSAALASSTIEVYGLSGNDIPPADAEVIQEYASANVELRAVAD 254
            +QRYVGP+ AL+DTL  L +LKVLD+S CTL+G AG+RY GL ALG  FA   K  LTHLRIS N+LHSEAALI+GGW P++ +LRY D+S R GF +LCG+    LHLRTLL+RDVG+DD  AE + ++++ S RL+ LD+S NQ+ V                                     +PHAA+L ELD+SSNGLT G             VK+  + AALAS +IE + LSGNDIPP+D E +Q YAS+NVELRAVAD
Sbjct:   26 EQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLAGNRYHGLNALGNTFASGKK--LTHLRISGNSLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDSLCGAFRTSLHLRTLLLRDVGMDDGEAEGVASFLALSARLEKLDLSDNQLHVRGARYLAGALRSNGSLSSLLLGHNRIGNEGALLLAASVPHAASLVELDVSSNGLTGGXXXXXXXXYTKKSVKEGFIEAALASYSIETFRLSGNDIPPSDVEEMQGYASSNVELRAVAD 290
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BLAST of mRNA_H-elongata_contig48829.12053.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.730e-55
Identity = 111/254 (43.70%), Postives = 139/254 (54.72%), Query Frame = 0 
Query:    1 DQRYVGPVAALSDTLAKLPKLKVLDMSRCTLLGRAGHRYRGLIALGRAFAYQTKSCLTHLRISNNNLHSEAALILGGWCPAMRRLRYFDVSDRVGFAALCGSLANMLHLRTLLMRDVGIDDRGAEDLTAYVSSSVRLQTLDISKNQMQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPHAANLTELDLSSNGLTVGVKDSLVSAALASSTIEVYGLSGNDIPPADAEVIQEYASANVELRAVAD 254
            +QRYVGP+ AL+DTL  L +LKVLD+S CTL+G +G+RY GL ALG   A   K  LTHLRIS N LHSEAALI+GGW P++ +LRY D+S R GF  LCG+    LHLRTLL+RDVG+DD  AE + ++++ SVRL+ LD+S+NQ +                                                                             LSGNDIPP+D E +QEYAS+NVELRAVAD
Sbjct:   92 EQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLASGKK--LTHLRISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQER-----------------------------------------------------------------------------LSGNDIPPSDVEEMQEYASSNVELRAVAD 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48829.12053.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSY1_ECTSI4.930e-7750.94Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5LDS7_9PHAE5.730e-5543.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 134..161
e-value: 0.26
score: 20.3
coord: 190..218
e-value: 59.0
score: 4.6
coord: 162..189
e-value: 0.011
score: 24.9
coord: 18..51
e-value: 160.0
score: 1.6
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 10..92
coord: 95..246
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 10..248
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 5..95
e-value: 1.5E-9
score: 39.0
coord: 96..252
e-value: 2.4E-30
score: 107.0
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 191..204
e-value: 0.21
score: 11.7
coord: 164..184
e-value: 0.012
score: 15.6
coord: 136..156
e-value: 0.29
score: 11.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48829contigH-elongata_contig48829:1303..3809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48829.12053.1mRNA_H-elongata_contig48829.12053.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48829 1303..3809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48829.12053.1 ID=prot_H-elongata_contig48829.12053.1|Name=mRNA_H-elongata_contig48829.12053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
DQRYVGPVAALSDTLAKLPKLKVLDMSRCTLLGRAGHRYRGLIALGRAFA
YQTKSCLTHLRISNNNLHSEAALILGGWCPAMRRLRYFDVSDRVGFAALC
GSLANMLHLRTLLMRDVGIDDRGAEDLTAYVSSSVRLQTLDISKNQMQVG
GARHLAKGMRSNGTLRTLFLGRNQIGDKGGRLLANSIPHAANLTELDLSS
NGLTVGVKDSLVSAALASSTIEVYGLSGNDIPPADAEVIQEYASANVELR
AVAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt