prot_H-elongata_contig48643.12023.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48643.12023.1
Unique Nameprot_H-elongata_contig48643.12023.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length172
Homology
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BLAST of mRNA_H-elongata_contig48643.12023.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.510e-12
Identity = 57/173 (32.95%), Postives = 74/173 (42.77%), Query Frame = 0 
Query:    1 GRFCRACYNDVDVAMAADTTEDRAIMCDTGEPVTMYATRQLRTKDTTDASHTGRKLQRWKENXXXXXXXXXQGNDDTEAXXXXXXXXXXXXXXXXXXXXXXXXKTNVCLDGCE--TDSGSEARICDPSCETGELYGDLGCNTEDGLYGRYCRACYNDVDVAMAADTNEDRAIM 171
            G  CR C+NDVD A+  DT ++RAIMC T  PV        RT     +  + R     K+N         QG                              + + C D CE  ++ G+  R        G  YG LGC+TEDG YG  CR C+NDVD A+  D  ++RAIM
Sbjct:  441 GPHCRTCFNDVDTALMRDTPKNRAIMCSTMLPV------GART-----SPESARPAP--KKNDVPAARGVKQGR------------------RVLRTTSSAGDEPSDCDDSCEYTSNDGTTGRXXXXXXXDGNPYGFLGCDTEDGQYGGNCRYCFNDVDSALKFDAQDNRAIM 582
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48643.12023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR80_ECTSI2.510e-1232.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48643contigH-elongata_contig48643:85..1199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48643.12023.1mRNA_H-elongata_contig48643.12023.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48643 85..1199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48643.12023.1 ID=prot_H-elongata_contig48643.12023.1|Name=mRNA_H-elongata_contig48643.12023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
GRFCRACYNDVDVAMAADTTEDRAIMCDTGEPVTMYATRQLRTKDTTDAS
HTGRKLQRWKENQKWKTTEKWQGNDDTEAKWKTSAKWQGNDDTEPKWKTT
QKYKTNVCLDGCETDSGSEARICDPSCETGELYGDLGCNTEDGLYGRYCR
ACYNDVDVAMAADTNEDRAIM*
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