prot_H-elongata_contig48322.11980.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48322.11980.1
Unique Nameprot_H-elongata_contig48322.11980.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length185
Homology
BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.360e-50
Identity = 108/211 (51.18%), Postives = 138/211 (65.40%), Query Frame = 0
Query:    1 KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSAHAFEHLRQTKEYGLRVLLSLPVHPGRKSS----SPLPNANAPV-------AATAIEAPGVGAISSSGXXXXHAEASAAGASFPPTGSRRRRWDVFF-------------GGR----RPMARCAASGVGGFLYLDLLFGRKASDNRKLRGPVELVNDLLQRFA 183
            +VV+FDA++GAMALDRWNL+ CGVFRYSCALEN+SK+EITEG VYMMSAHAFEHLRQTKE+GLRV+ S+P+   + ++    SP PN NA +       ++ + +  G+ A+S +      A A+A  A+  P   RRRRW V F             GGR    RP AR   S  G  +YL+LLFG+K  D+R LR PVE+VN+LL RFA
Sbjct:  156 QVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPN-NAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAP---RRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 362          
BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.810e-47
Identity = 107/210 (50.95%), Postives = 135/210 (64.29%), Query Frame = 0
Query:    1 KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSAHAFEHLRQTKEYGLRVLLSLPVHPGRKSS----SPLP-NANAPVAATAIEAP-----GVGAISSSGXXXXHAEASAAGASFPPTGSRRRRWDVFF-------------GGR----RPMARCAASGVGGFLYLDLLFGRKASDNRKLRGPVELVNDLLQRFA 183
            +VV+FDA++GAMALDRWNL+ CGVFRYSCALEN+SK+EITEG VYMMSAHAFEHLRQTKE+GLRV+ S+P+   ++++    SP P NA   ++ T   +P     G+  +S +      A  +A  A   P   RRRRW V F             GGR    RP AR   S  G  +YL+LLFG+K  D+R LR PVE+VN+LL RFA
Sbjct:  354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAP---RRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 560          
BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Match: A0A7S2Y0H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0H0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.710e-5
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0
Query:    1 KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSA---HAFEHLRQTKEYGLRVLLSLPV 71
            +V  FDAE+G   L+R NL       Y+CALEN+S L+I    V+  ++   H   HL + +E+ LRVLL  P+
Sbjct:  214 EVAVFDAESGVFRLERSNLVSRPQVLYTCALENISALQIAGDTVFTFTSSRRHTDNHLMERQEFSLRVLLCRPM 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC33_ECTSI2.360e-5051.18RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE2.810e-4750.95RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2Y0H0_9STRA1.710e-540.54Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48322contigH-elongata_contig48322:2429..4001 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48322.11980.1mRNA_H-elongata_contig48322.11980.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48322 2429..4001 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48322.11980.1 ID=prot_H-elongata_contig48322.11980.1|Name=mRNA_H-elongata_contig48322.11980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSAH
AFEHLRQTKEYGLRVLLSLPVHPGRKSSSPLPNANAPVAATAIEAPGVGA
ISSSGTGIGHAEASAAGASFPPTGSRRRRWDVFFGGRRPMARCAASGVGG
FLYLDLLFGRKASDNRKLRGPVELVNDLLQRFAK*
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