prot_H-elongata_contig48191.11967.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48191.11967.1
Unique Nameprot_H-elongata_contig48191.11967.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length261
Homology
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 2.600e-119
Identity = 188/262 (71.76%), Postives = 212/262 (80.92%), Query Frame = 0
Query:    1 RYFKKVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPDPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGK-HAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 261
            R+FKK DT LKESLKKESIAS D       G SG  G+VRVD+TYRDPEMPEVEVDFE+QVKG+RYGQDYIPV  +DEGSLKLP+E PSLKVLGF P+SSV RH YMD+TFVV+ EPGS Q+AGA+SSL  AMRNLDQ+A+ RFVR+K+  PWLG LIPD TGV    R LFQK+PF EDVR + F SF+K P SR PS+EQKR+S SLVEAMMIPEV G    GVRD LVL+PVRQGINGAKVARAI PEC++P V PSVK
Sbjct:  219 RFFKKTDTGLKESLKKESIASYD-----PAGGSGSDGKVRVDKTYRDPEMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAVARFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAKPPPSRTPSDEQKRVSASLVEAMMIPEVDGHIQGGVRDCLVLDPVRQGINGAKVARAIDPECELPEVNPSVK 475          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A200QB51_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QB51_9MAGN)

HSP 1 Score: 134 bits (337), Expect = 3.940e-32
Identity = 77/220 (35.00%), Postives = 132/220 (60.00%), Query Frame = 0
Query:   39 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKN-NNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCV 256
            ++VD  Y+  E P   V  E ++KGYRYG   +P+ P +  ++K   E  S+K+LGF  AS++ RH YM +  + +AEPG+A++  A+S+LVRAM+ ++++A++R V K+  +N  +GAL P+P+ + + P  + F  LPF+EDVR++ F SFS  P S +P+E Q+  + +LV  + +    GK   ++     NPV +        ++  P+  +P +
Sbjct:  258 IKVDYEYKRVEDPTKVVPPEQRIKGYRYGPQVVPISPAEWDAVKFKPEK-SVKLLGFTNASNIMRHYYMKDVSIFIAEPGNAKATLAISALVRAMKEMNKVAILRCVFKQGQSNVVVGALTPNPSNLENIPDSFYFNVLPFAEDVREFQFPSFSNFPPSLQPNERQQEAADNLVMRLDLAP-PGKEEALQPDFTPNPVLERFYRVLELKSKKPDAHVPAL 475          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A4Y7J9E8_PAPSO (ATP-dependent DNA helicase 2 subunit KU80 n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J9E8_PAPSO)

HSP 1 Score: 130 bits (327), Expect = 9.250e-31
Identity = 79/225 (35.11%), Postives = 134/225 (59.56%), Query Frame = 0
Query:   39 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 261
            ++VD  Y+  E P   +  E ++KGYRYG   +P+   +  ++K   E  S+K+LGF  AS++ RH YM +  + +AEPG+A++  AVS+LVRAM  ++++A++R V R+   +  +GAL P+P+ V + P  + F  LPF+EDVR++ F SFS  P S +P+E+Q+  + +LV  M+     GK   +R     NPV +        ++  P+ ++P +  ++K
Sbjct:  272 IKVDYEYKGVEDPTKVIPPEQRIKGYRYGPQVVPISSDEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVSIFIAEPGNAKATVAVSALVRAMAEMNKVAILRCVWRQGQASVVVGALTPNPSNVENIPDSFYFNVLPFAEDVREFQFPSFSNLPLSMQPNEKQQEAADNLV-MMLDLAPPGKEEILRPEFTPNPVLERFYRVLEIKSKKPDAEVPPLDTTLK 494          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A835IGM5_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IGM5_9MAGN)

HSP 1 Score: 126 bits (316), Expect = 2.870e-29
Identity = 80/219 (36.53%), Postives = 125/219 (57.08%), Query Frame = 0
Query:   39 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMP 254
            V+VD  Y+  E P   V  E ++KGYRYG   +P+   +  ++K  PE+G  +++LGF  AS++ RH YM + ++ +AEPG+  +A AVS+ VRAM+ ++++A+VR V R+   N  LG L P+ +   + P  + F  LPF+EDVR++ F SFSK P S  P+E Q+  +  LV  M+     GK   +      NPV +        +   P+ D+P
Sbjct:  260 VKVDYEYKGTEDPNKIVPPEQRIKGYRYGPQVVPISSAELEAIKFKPEKG--VRLLGFSNASNILRHYYMKDVYIFIAEPGNMNAAVAVSAFVRAMKEMNKVAIVRCVWRQGQGNVVLGVLTPNISNRENIPDSFFFNVLPFAEDVREFQFPSFSKFPPSWLPNERQQEAADKLV-MMLDLAPPGKEEVLLPDFTPNPVLERFYRLLELKTRKPDADVP 475          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A662YG02_9STRA (Ku domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG02_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.440e-29
Identity = 89/259 (34.36%), Postives = 130/259 (50.19%), Query Frame = 0
Query:    5 KVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPDPT----GVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRK--PSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 257
            K  T    +L+KES  S +           VGG+V++DR Y  P+ P+ EV  + QVK YRYG + +P    D    K   E  SLKVLGF+  + +    +   T + +AEPG   +A  +++L+ AMR L Q+A+ RFV +KN  P + ALIP       G   +  W  Q+LPF ED+R Y F         RK  P+EEQ+ ++  LV+++ I + K    G       NPV +    A   RA+     +P +P
Sbjct:  204 KTKTATLPTLQKESQTSYE---------KDVGGKVKLDRRYTSPQHPDEEVPPDQQVKAYRYGAEKVPFSSADVEFFKFQTEK-SLKVLGFLDQAQLSHSKFAGGTDIFIAEPGKPHAAQCLAALIDAMRELQQVAIARFVARKNAAPKIVALIPHAPCASRGENYYALWS-QQLPFDEDLRSYEFAPLK----CRKFTPTEEQQSLADKLVDSLSIRDDKADEVGA----CFNPVIRRFFHAASMRAMDESVGVPVLP 443          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A3R7I120_9STRA (VWFA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7I120_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.940e-28
Identity = 86/257 (33.46%), Postives = 128/257 (49.81%), Query Frame = 0
Query:    5 KVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIP----DPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 257
            K  TT   +L KES  S +   A         G+V++DR Y  P  P+ +V  + QVK YRYGQ+ +P    D    K   E  SLKVLGF+    +    ++  T + +AEPG   ++   ++L+ AMR + Q+A+ RFV +KN  P + ALIP    D      +  W  Q+LP+ ED+R Y F        S  P++EQ+ ++  LV+++ I + K    G    L  NPV +    A   RA+     +P VP
Sbjct:  276 KTKTTTLPTLSKESQVSYEKETA---------GKVKLDRRYTSPHQPDTDVAPDQQVKAYRYGQEKVPFASADVEFFKFQTEK-SLKVLGFLDQEQLNHSKFVGGTDIFIAEPGKPHASECFAALIEAMREMQQVAIARFVARKNAAPKIVALIPHAPSDSRSENYYAMWS-QQLPYEEDIRSYEFAPLECRKFS--PTDEQQALADKLVDSLSIRDDKADEVG----LCFNPVIRRFFHAVSMRAMDESTGVPTVP 515          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: K3X675_GLOUD (VWFA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X675_GLOUD)

HSP 1 Score: 123 bits (309), Expect = 2.670e-28
Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 0
Query:   37 GRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIP-DPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 257
            G+V+VDR Y  P+ P+ EV  + QVK YRYG++ +P    D    KL  E  SLKVLGF+    + R  + D T + +AEPG   +A  +++L+  M+ LDQ+A+ RFV +KN  P + ALIP  P    ++  +  Q+LP+ ED+R Y F       S  +PS+ Q+  +  LV+++ + + K    G       NPV      A   RA   +  +P +P
Sbjct:  308 GKVKVDRRYTTPQNPDEEVAPDQQVKAYRYGKEKVPFSSADVEFFKLQTEK-SLKVLGFLDKKLLNRWKFTDGTDIFIAEPGKPHAAQCLAALIEGMKELDQVAIARFVARKNAAPKIVALIPHSPGSADNYYAFWSQQLPYEEDLRSYEFAPLKM--SKHRPSDAQQAAADKLVDSLSVRDDKVDEFGS----CFNPVIHRFFHAVSTRAFQEDAAVPPLP 522          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: G9I491_PINSY (ATP-dependent DNA helicase 2 subunit KU80 n=2 Tax=Pinus sylvestris TaxID=3349 RepID=G9I491_PINSY)

HSP 1 Score: 123 bits (308), Expect = 3.390e-28
Identity = 72/226 (31.86%), Postives = 132/226 (58.41%), Query Frame = 0
Query:   39 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 261
            V++D  Y+  E P+  +  E ++KG+ YG   +P+   ++ +LK  PE+G  +K+LGF  ASS+PRH YM +T +++AEPG+ ++  AVS++ RAM    ++A++R V R++  N  LG L P+ +  ++    + F  +PF ED+R++ F SF   P+S++P+  Q+  + + V+ + +    G+   +   L LNP+ +        ++   + D+P V  +VK
Sbjct:  265 VKMDIEYKSREEPDKTIPPEQRIKGFNYGPQVVPISMAEQETLKFKPEKG--VKLLGFTDASSIPRHSYMKDTSILIAEPGNTKAILAVSAVARAMEETKKVAILRCVWRERQANVILGVLTPNISNKSNAADSFYFNIIPFVEDIREFPFASFDSFPASQQPNIVQQEAADNFVQMLDLAP-PGREEALLPELTLNPILERFYSFLDTKSRRSDADVPPVDDAVK 487          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: F0X1I1_9STRA (Uncharacterized protein AlNc14C624G12272 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X1I1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.270e-28
Identity = 80/220 (36.36%), Postives = 122/220 (55.45%), Query Frame = 0
Query:   39 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPD-PTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 257
            VR DR Y DP+ P+ EV  + ++K Y YG + +P    D  + K   E  SLK+LGFV A SV    +M  T V +++P    +A   ++LV AMR  +Q+A+ RFV +KN  P + ALIP  P     +  +  Q+LPF ED+RD+ F S  +  S   PS+EQ++I+ SLV+ + + + +     +      NPV +    + VARAI P+  +  +P
Sbjct:  293 VRQDRRYMDPDSPDEEVPPDQRIKAYTYGHESVPFSSADLEAFKFHTEK-SLKLLGFVDAKSVHPANFMVNTNVFLSDPTKKNAATCFATLVNAMRMKNQVAIARFVPRKNAAPKVIALIPHIPAKEIPYHAFWSQQLPFEEDLRDFEFPSILQDNSKSIPSKEQQQIANSLVDGLSVDDDE-----INPRTCYNPVLRRFYDSVVARAIDPDAGISPLP 506          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A2K2DHK7_BRADI (Ku domain-containing protein n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DHK7_BRADI)

HSP 1 Score: 121 bits (303), Expect = 6.980e-28
Identity = 72/199 (36.18%), Postives = 119/199 (59.80%), Query Frame = 0
Query:   39 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPV 234
            V+VD  Y+    P+  V  + ++KGY YG   +P+   +  ++K  PE+G  +K+LGF   SS+PRH +M +    V EPG+ ++  AVS++ RAM+ ++++A++R V R+   N   G L P+ + V + P  + F  LPFSED+R++ F SFS  PSS +P+EEQ+  + SLV+ + +    G+   +R     NP+
Sbjct:  262 VKVDFEYKSILEPDTVVPPDQRIKGYLYGPQVVPISSAEWEAVKFKPEKG--VKLLGFADRSSIPRHYFMKDVNSFVPEPGNKKATVAVSAIARAMQEMNKVAILRCVWRQGQGNVAFGVLTPNISSVNNVPDSFFFNILPFSEDIREFQFRSFSSLPSSSQPTEEQQEAADSLVKMLDLAP-PGREEILRPDFTPNPM 457          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE2.600e-11971.76Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A200QB51_9MAGN3.940e-3235.00ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=... [more]
A0A4Y7J9E8_PAPSO9.250e-3135.11ATP-dependent DNA helicase 2 subunit KU80 n=3 Tax=... [more]
A0A835IGM5_9MAGN2.870e-2936.53ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=... [more]
A0A662YG02_9STRA9.440e-2934.36Ku domain-containing protein n=2 Tax=Nothophytopht... [more]
A0A3R7I120_9STRA1.940e-2833.46VWFA domain-containing protein n=3 Tax=Phytophthor... [more]
K3X675_GLOUD2.670e-2835.14VWFA domain-containing protein n=1 Tax=Globisporan... [more]
G9I491_PINSY3.390e-2831.86ATP-dependent DNA helicase 2 subunit KU80 n=2 Tax=... [more]
F0X1I1_9STRA6.270e-2836.36Uncharacterized protein AlNc14C624G12272 n=1 Tax=A... [more]
A0A2K2DHK7_BRADI6.980e-2836.18Ku domain-containing protein n=4 Tax=Brachypodium ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006164Ku70/Ku80 beta-barrel domainSMARTSM00559ku_4coord: 52..192
e-value: 1.7E-25
score: 100.7
IPR006164Ku70/Ku80 beta-barrel domainPFAMPF02735Kucoord: 25..202
e-value: 1.1E-33
score: 116.7
IPR016194SPOC-like, C-terminal domain superfamilyGENE3D2.40.290.10coord: 2..192
e-value: 9.4E-45
score: 154.6
IPR016194SPOC-like, C-terminal domain superfamilySUPERFAMILY100939SPOC domain-likecoord: 37..257
NoneNo IPR availablePANTHERPTHR12604KU AUTOANTIGEN DNA HELICASEcoord: 8..260
NoneNo IPR availablePANTHERPTHR12604:SF4X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5coord: 8..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48191contigH-elongata_contig48191:149..3594 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48191.11967.1mRNA_H-elongata_contig48191.11967.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48191 149..3594 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48191.11967.1 ID=prot_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
RYFKKVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEM
PEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASS
VPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNN
NPWLGALIPDPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSE
EQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPE
CDMPCVPPSVK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006164Ku70/Ku80_beta-barrel_dom
IPR016194SPOC-like_C_dom_sf