prot_H-elongata_contig48094.11950.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48094.11950.1
Unique Nameprot_H-elongata_contig48094.11950.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length129
Homology
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BLAST of mRNA_H-elongata_contig48094.11950.1 vs. uniprot
Match: D8LSN2_ECTSI (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.600e-19
Identity = 64/129 (49.61%), Postives = 69/129 (53.49%), Query Frame = 0 
Query:    1 MSEQAYVAWLLGGGAAAEATAREDAAGAEAGAGGGSRSGMLKHGDIGYHTARRSPLSPDTSYMAEVGAWAVVQGCLDAYHQRRG-AVSGGGXXGFGAKAAE------VPRVIALLSEAGPALLSGYEAR 122
            MS+QAYV WLLGGGAA E                            G     RS LSPDTSYMAE GAW+VVQ CLD YHQRR  AV+ G     G  AA       +PR + LL EAGPALLS YEAR
Sbjct: 1087 MSQQAYVTWLLGGGAAEEXXXXXXXXXXXXXX---XXXXXXDRASGGKAYTERSTLSPDTSYMAEAGAWSVVQACLDEYHQRRSVAVATGSGNADGGSAATAGSTEMLPRAVGLLPEAGPALLSAYEAR 1212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48094.11950.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN2_ECTSI5.600e-1949.61Conserved oligomeric Golgi complex subunit 5 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48094contigH-elongata_contig48094:1824..2658 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48094.11950.1mRNA_H-elongata_contig48094.11950.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48094 1824..2658 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48094.11950.1 ID=prot_H-elongata_contig48094.11950.1|Name=mRNA_H-elongata_contig48094.11950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MSEQAYVAWLLGGGAAAEATAREDAAGAEAGAGGGSRSGMLKHGDIGYHT
ARRSPLSPDTSYMAEVGAWAVVQGCLDAYHQRRGAVSGGGGGGFGAKAAE
VPRVIALLSEAGPALLSGYEARIRAAST*
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