prot_H-elongata_contig48052.11945.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48052.11945.1
Unique Nameprot_H-elongata_contig48052.11945.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length362
Homology
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: D8LH45_ECTSI (Splicing factor YJU2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH45_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 2.790e-78
Identity = 138/167 (82.63%), Postives = 149/167 (89.22%), Query Frame = 0
Query:   11 RGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVLRASAARRGK--GDAATAGRSETFEDDEALIASIQFGGPRIRRLAD 175
            RGKKFNS KEDCIGEDYL IR+FRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATE+EHK+AREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHE ++T +VL+ASAARR K  GD   AG  E  E D A+IA+IQFGG ++RRL D
Sbjct:   52 RGKKFNSLKEDCIGEDYLTIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKEHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKASAARRNKSVGDKGGAGAGENAEVD-AMIANIQFGGSKVRRLVD 217          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A835Z1Z4_9STRA (Splicing factor YJU2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z4_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.110e-47
Identity = 102/183 (55.74%), Postives = 123/183 (67.21%), Query Frame = 0
Query:   11 RGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVLRASAARRGKGDAATAGRSETFEDDE------ALIASIQFGG-----PRIRRLAD-DGDSDE 181
            RGKKFNS KEDC GEDY GIRKFRFYIKC+ C+QEITFKTDPE  DYELE GA+RNFESW + +A E +   AR  E+K+D MK LENRTLDSKIE++I+DALDEI+AVN+RHE +DTA +L + A  +                        ALI SI+FG        +RRL+D +G  DE
Sbjct:   52 RGKKFNSKKEDCEGEDYKGIRKFRFYIKCITCNQEITFKTDPEHADYELEVGATRNFESWRETEAAETKAVAARAAEDKNDPMKALENRTLDSKIEMDILDALDEIRAVNKRHERVDTAAILESRARSQXXXXXXXXXXXXXXXXXXXXXXXXALIKSIKFGARTAGAAAVRRLSDSEGSGDE 234          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A2D4C0T0_PYTIN (Splicing factor YJU2 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0T0_PYTIN)

HSP 1 Score: 160 bits (405), Expect = 4.520e-43
Identity = 96/178 (53.93%), Postives = 122/178 (68.54%), Query Frame = 0
Query:    2 ISCAR--RHFRRGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVLRASAARRGKGDAATAGRSETFE-DDEALIASIQFGGPRIRRLADD 176
            I CA    +  RGKKFNS KED + E+YLGIR FRFYIKCV CS EITFKTDP+ GDY  E G  RNFE W +K+A EE   K RE+EEK D MK LENRTLDSK E++I+DALDEIKA+N+RH  IDT ++L+  A    + D+A   + E  + +++A +A   F   + R LA++
Sbjct:   41 IQCATCGEYMYRGKKFNSRKEDVVEENYLGIRIFRFYIKCVTCSSEITFKTDPKNGDYVAEHGCQRNFEPWREKEAAEEAAMKQREDEEKGDAMKALENRTLDSKREMDILDALDEIKAINQRHAKIDTDQLLQQHA----QLDSAQQAQDEQQQLEEDAKLARQVFEQRKKRPLAEE 214          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A8K1C367_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C367_PYTOL)

HSP 1 Score: 155 bits (392), Expect = 3.890e-41
Identity = 86/137 (62.77%), Postives = 99/137 (72.26%), Query Frame = 0
Query:    2 ISCAR--RHFRRGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVLRASA 136
            I CA    +  RGKKFNS KED + EDY GIR FRFYIKCV CS EITFKTDP+ GDY  E G  RNFE W +K A EE   K +E+EEK D MK LENRTLDSK E++I+DALDEIKA+N+RH  IDT  +L+  A
Sbjct:   41 IQCATCGEYMYRGKKFNSRKEDVVEEDYFGIRIFRFYIKCVTCSSEITFKTDPKNGDYVAEHGCQRNFEPWREKDAEEEAALKQKEDEEKGDAMKVLENRTLDSKREMDILDALDEIKAINQRHSKIDTDALLQQHA 177          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A1W0A1I0_9STRA (Splicing factor YJU2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1I0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 5.760e-41
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 0
Query:    2 ISCAR--RHFRRGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVL 132
            I CA    +  RGKKFNS KED + EDY GI+ FRFYI+CV C+ EITFKTDP+ GDY  E G  RNFE W + +A +E+  K REEEEK D+MKQLENRTLDSK E++I+DALDEIKA+N+RH  +DT  +L
Sbjct:   41 IQCATCGEYMYRGKKFNSRKEDVLEEDYHGIKIFRFYIRCVTCASEITFKTDPQHGDYVAEHGCQRNFEPWRENEANDEKMLKEREEEEKGDSMKQLENRTLDSKREMDILDALDEIKAINQRHAKVDTDALL 173          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A6G0XWY7_9STRA (Splicing factor YJU2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWY7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.020e-40
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0
Query:   12 GKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVL 132
            GKKFNS KED + EDY GIR +RFYI+C +CS EITFKTDP+ GDY  E G  RNFE W ++ A E+E  KAREEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  +DT  +L
Sbjct:   53 GKKFNSRKEDVLDEDYFGIRIYRFYIRCSMCSNEITFKTDPKNGDYATEHGCKRNFEPWRERAADEKEAVKAREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDALL 173          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A1V9Y4X5_9STRA (Splicing factor YJU2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4X5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.230e-40
Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = 0
Query:   11 RGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVL 132
            RGKKFNS KED + EDY GI+ FRFYI+C+ C+ EITFKTDP+ GDY  E G  RNFE W +K A EE+  K REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  +DT  +L
Sbjct:   52 RGKKFNSRKEDVLEEDYHGIKIFRFYIRCITCASEITFKTDPQHGDYVAEHGCQRNFEPWREKDADEEKMLKEREEEEKGDSMKALENRTLDSKREMDILDALDEIKAINQRHAKVDTDALL 173          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A485KX06_9STRA (Splicing factor YJU2 n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KX06_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.330e-40
Identity = 91/181 (50.28%), Postives = 118/181 (65.19%), Query Frame = 0
Query:   12 GKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVLRASAARRGKGD-AATAGRSETFEDDEALIASIQFGGPRIRRLADDGDSDEKESSTKPRGG 191
            GKKFNS KED + EDY G++ FRFYI+C +CS EITFKTDP+ GDY  E G  RNFE+W D++A  +   K REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  +DT  +L+         D  ATAG   T  +D+ + + ++    R       GD+  K+S  KP  G
Sbjct:   53 GKKFNSRKEDVLDEDYFGVKIFRFYIRCSMCSNEITFKTDPKNGDYATEHGCKRNFEAWRDREADAQAVLKEREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDALLQKVKHVNDPNDPTATAGN--TILNDDEIQSQVEAFRKRKLEATATGDAASKQS--KPENG 229          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: A0A024UUI7_9STRA (Splicing factor YJU2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUI7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.570e-39
Identity = 76/121 (62.81%), Postives = 93/121 (76.86%), Query Frame = 0
Query:   12 GKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVL 132
            GKKFNS KED + EDY G++ FRFYI+C +CS EITFKTDP+ GDY  E G  RNFE W +++A E    K REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  +DT  +L
Sbjct:   53 GKKFNSRKEDVLDEDYFGVKIFRFYIRCSMCSSEITFKTDPKNGDYATEHGCKRNFEQWREREADEAAILKEREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDAIL 173          
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Match: W4H735_9STRA (Splicing factor YJU2 n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H735_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.780e-39
Identity = 76/121 (62.81%), Postives = 93/121 (76.86%), Query Frame = 0
Query:   12 GKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHENIDTAEVL 132
            GKKFNS KED + EDY G++ FRFYI+C +CS EITFKTDP+ GDY  E G  RNFE W +++A E    K REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  +DT  +L
Sbjct:   53 GKKFNSRKEDVMDEDYFGVKIFRFYIRCSMCSNEITFKTDPKNGDYATEHGCKRNFEQWREREADEAAILKEREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDAIL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48052.11945.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH45_ECTSI2.790e-7882.63Splicing factor YJU2 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z1Z4_9STRA5.110e-4755.74Splicing factor YJU2 n=1 Tax=Tribonema minus TaxID... [more]
A0A2D4C0T0_PYTIN4.520e-4353.93Splicing factor YJU2 n=2 Tax=Pythium insidiosum Ta... [more]
A0A8K1C367_PYTOL3.890e-4162.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1W0A1I0_9STRA5.760e-4161.65Splicing factor YJU2 n=1 Tax=Thraustotheca clavata... [more]
A0A6G0XWY7_9STRA2.020e-4065.29Splicing factor YJU2 n=1 Tax=Aphanomyces euteiches... [more]
A0A1V9Y4X5_9STRA2.230e-4064.75Splicing factor YJU2 n=1 Tax=Achlya hypogyna TaxID... [more]
A0A485KX06_9STRA6.330e-4050.28Splicing factor YJU2 n=2 Tax=Aphanomyces TaxID=100... [more]
A0A024UUI7_9STRA4.570e-3962.81Splicing factor YJU2 n=1 Tax=Aphanomyces invadans ... [more]
W4H735_9STRA5.780e-3962.81Splicing factor YJU2 n=5 Tax=Aphanomyces astaci Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 73..99
NoneNo IPR availablePANTHERPTHR12111:SF1COILED-COIL DOMAIN-CONTAINING PROTEIN 94coord: 7..270
IPR007590Saf4/Yju2 proteinPFAMPF04502DUF572coord: 6..357
e-value: 2.7E-52
score: 178.5
IPR007590Saf4/Yju2 proteinPANTHERPTHR12111CELL CYCLE CONTROL PROTEIN CWF16-RELATEDcoord: 7..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48052contigH-elongata_contig48052:1338..2423 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48052.11945.1mRNA_H-elongata_contig48052.11945.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48052 1326..3339 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48052.11945.1 ID=prot_H-elongata_contig48052.11945.1|Name=mRNA_H-elongata_contig48052.11945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
MISCARRHFRRGKKFNSWKEDCIGEDYLGIRKFRFYIKCVICSQEITFKT
DPEKGDYELETGASRNFESWTDKQATEEEHKKAREEEEKSDNMKQLENRT
LDSKIELEIMDALDEIKAVNRRHENIDTAEVLRASAARRGKGDAATAGRS
ETFEDDEALIASIQFGGPRIRRLADDGDSDEKESSTKPRGGQGFREDVEE
VVAAKGAPGNQNADHGSSGMEKKEEGGAGRKHPVSDVMSKTSLVSRSQTG
RVKANGTDGSIGTKILVKPKKKRAKGEDGRCAEDKDRAIAKREKRENRAN
LTEKASPSEPEKVGSGPGMTKPSASAQVPRAAKVVVSSGSTPLGGLNLLG
AYGSSSDSDVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007590Saf4/Yju2