prot_H-elongata_contig47932.11930.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47932.11930.1
Unique Nameprot_H-elongata_contig47932.11930.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
[Close]
BLAST of mRNA_H-elongata_contig47932.11930.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.520e-24
Identity = 46/86 (53.49%), Postives = 66/86 (76.74%), Query Frame = 0 
Query:    1 VQVDGIAFNVSQGEVEQWFRDAGVTPAKVTLVMRPEDSPRAGQNKGRAFVELETEEDTQTSLSVSGRSMGDRWVSIARLDSPLEEV 86
            +QVDG+ F ++  E+EQWF +AG +P KVT+ + PE S RAGQNKG+A++    EED + +LS+SGRS+G+RW++I+RL  PLEE 
Sbjct:  123 IQVDGLPFTMATEELEQWFEEAGCSPPKVTVPLWPERSIRAGQNKGKAYLHFSGEEDVRKALSLSGRSIGERWINISRLAQPLEEA 208
[Close]
BLAST of mRNA_H-elongata_contig47932.11930.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.940e-24
Identity = 47/85 (55.29%), Postives = 66/85 (77.65%), Query Frame = 0 
Query:    1 VQVDGIAFNVSQGEVEQWFRDAGVTPAKVTLVMRPEDSPRAGQNKGRAFVELETEEDTQTSLSVSGRSMGDRWVSIARLDSPLEE 85
            +QV+G+ F ++  E+EQWF +A  +PAKV + + PE S RAGQNKG A++   +EEDTQ +LS+SGRS+GDRW++I+RL  PLEE
Sbjct:  123 IQVNGLPFTMATEEIEQWFDEAACSPAKVVVPLWPERSIRAGQNKGMAYLYFSSEEDTQKALSLSGRSIGDRWINISRLVQPLEE 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47932.11930.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS6_ECTSI4.520e-2453.49G-rich sequence factor 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KVQ1_9PHAE7.940e-2455.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..81
e-value: 1.6E-13
score: 52.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 3..72
e-value: 4.4E-5
score: 23.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..81
score: 10.156
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47932contigH-elongata_contig47932:3555..3830 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47932.11930.1mRNA_H-elongata_contig47932.11930.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47932 3555..3830 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47932.11930.1 ID=prot_H-elongata_contig47932.11930.1|Name=mRNA_H-elongata_contig47932.11930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
VQVDGIAFNVSQGEVEQWFRDAGVTPAKVTLVMRPEDSPRAGQNKGRAFV
ELETEEDTQTSLSVSGRSMGDRWVSIARLDSPLEEVRGKNLM
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf