prot_H-elongata_contig47809.11916.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig47809.11916.1
Unique Name	prot_H-elongata_contig47809.11916.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	212

Homology

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.620e-106
Identity = 159/206 (77.18%), Postives = 168/206 (81.55%), Query Frame = 0

Query:    1 MKSFAVAAASLCVLAPVAAFVPSAP-SLVSXXXXXXXXXXXXTPERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGD-GPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            MKSF  AA SLC LAP +AFVP A   L              TPERS++IPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWV GEG+GTAAR+KWYREAELAH RVAMLAA GWIFPEIYHFPGN VLGPDRFAE+NPLLAY  IP AGGIQIVVT+LILE IRLNRS+R D G  GDIGLGQGEGRWNPF F YTEE+Y EKQLQ
Sbjct:    1 MKSFVAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQ 206

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.180e-60
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 0

Query:   46 SVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            S A+P D  P  LDG + GDVGFDP GF+NNPP  W+ G GSG +  +KWYREAE+ H RVAMLAA GW+FP IYH PGN  +G D FA LNP  A   +P AG  QI  T+  +EL R+NR +RGD   GD+GLGQGEGRWNPFGF Y+EE+Y EKQLQ
Sbjct:   85 STALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG-GSGRS--LKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQ 241

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 7.870e-60
Identity = 111/201 (55.22%), Postives = 129/201 (64.18%), Query Frame = 0

Query:    5 AVAAASLCVLAPVAAFVPSAPSLVSXXXXXXXXXXXXTPERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            AVAA +L + AP AAFVP  P                  ERS AIP D  PE LDG +VGDVGFDPAGF+NNPP +W+ G   G    +KWYREAE+ H R AMLAA GW+ PE  HFPGN  +G D FA+ NP  A   +P AG  QI  T+  +E+ R+NR VRGD  PGD+GLGQG    NPFGF Y+EEQYREKQLQ
Sbjct:    3 AVAALAL-LAAPAAAFVPVTPVATPSKVVLQA-------ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKEPGDLGLGQGG--LNPFGFDYSEEQYREKQLQ 190

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 4.540e-57
Identity = 96/162 (59.26%), Postives = 112/162 (69.14%), Query Frame = 0

Query:   44 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            ERS AIP D  PE LDG +VGDVGFDPAGF+NNPP +W+ G   G    +KWYREAE+ H R AMLAA GWI PE  HFPGN  +G D FA+ NP  A   +P AG  QI  T+  +E+ R+NR VRG   PGD+GLGQG    NPFGF YTEE+Y+ KQLQ
Sbjct:   37 ERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAEPGDLGLGQGG--LNPFGFNYTEEEYKTKQLQ 193

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE)

HSP 1 Score: 189 bits (479), Expect = 4.540e-56
Identity = 91/162 (56.17%), Postives = 109/162 (67.28%), Query Frame = 0

Query:   44 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANN-PPSWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            +RS+A+P D YP GLDG + GD GFDPAGF NN P  W+ G   G    +KWYREAE+ H RVAMLA  GWIFPEI HF GN  +G D FAELNPL A    P AG +QI   +  LE  R+ R ++GD   GD+GLGQGEGRWNPF F Y+ E+Y+  Q +
Sbjct:   96 DRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAAAGDLGLGQGEGRWNPFKFNYSPEEYKTMQTR 254

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK)

HSP 1 Score: 182 bits (461), Expect = 5.510e-54
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 0

Query:   44 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPE-IYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQY 198
            ERS A+P+DPYPEGLDG M GDVGFDPAGFANNPP  W+ G G  +   + WYREAELAH RVAMLA  GW FPE  YHFPGN + G D FAE NP+ A    P  G IQI + +  +E+ R+   +RGD  PGD+ LGQ  G  NPFG  Y +++Y
Sbjct:   40 ERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRAPGDLNLGQ-RGAINPFGLNYDDDEY 192

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC)

HSP 1 Score: 181 bits (459), Expect = 1.520e-53
Identity = 89/162 (54.94%), Postives = 110/162 (67.90%), Query Frame = 0

Query:   44 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANN-PPSWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            +RS+A+P+D  P  LDG + GD GFDP GF+NN P +W+ G   G    +KWYREAEL H RVAMLAA GWIFPEI+H PGN  +G D FAE NP  A   +P  G  QI  T+  +E  RL R VRG+   GD+GLGQGEGRWNPFGF + E++Y   Q++
Sbjct:   46 DRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVR 204

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN)

HSP 1 Score: 162 bits (409), Expect = 3.260e-46
Identity = 82/149 (55.03%), Postives = 101/149 (67.79%), Query Frame = 0

Query:   58 LDGEMVGDVGFDPAGFANNPPS--WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            LDG +VGDVGFDP GF+   P   W   EG G+   +K +REAEL H R+A LA  GWIFPE+YHFPG +    D FA++NP  A   IP AG +QI+  +  LE++R+NR       PGD+GLGQGEGRWNPFGF YT E+Y +KQLQ
Sbjct:   52 LDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQ 193

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A6S8TCV5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TCV5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.320e-42
Identity = 83/161 (51.55%), Postives = 103/161 (63.98%), Query Frame = 0

Query:   46 SVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS--WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            SVA+P    P  LDG +VGDVGFDP GF+   P   WV  EG G+   +K +REAEL H R+A LA  GW+FPEI H+PG +    + F ++NP  A   IP AG  QI+  ++  E+ R+N+       PGD GLGQG GRWNPFGF YT E+YREKQLQ
Sbjct:   41 SVALPWTTTP--LDGSLVGDVGFDPLGFSKYAPGAWWVGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHWPGKD----NAFGKMNPFDALDAIPKAGWYQILGFMVACEVWRINKLKDPSYMPGDSGLGQGPGRWNPFGFNYTPEEYREKQLQ 192

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BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A6S8TQ14_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TQ14_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.330e-41
Identity = 81/161 (50.31%), Postives = 99/161 (61.49%), Query Frame = 0

Query:   46 SVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS--WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 204
            SVA+P       LDG +VGDVGFDP GF+   P   W   EG G+   +K +REAEL H R+A LA  GW+FPEI HFPG +      F ++NP  A   IP AG  QI+  +  LE+ R+N+       PGD+ LGQG GRWNPFGF YT E+Y EKQLQ
Sbjct:   47 SVALPF--TTTNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHFPGKD----GAFGKMNPFEAVDAIPNAGWYQILAFMASLEVYRVNKLKDPAYVPGDLSLGQGPGRWNPFGFDYTPEEYAEKQLQ 198

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot

BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FUR2_ECTSI	1.620e-106	77.18	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
W7TTD7_9STRA	3.180e-60	61.25	Light-harvesting protein n=3 Tax=Monodopsidaceae T...	[more]
A0A835YWE6_9STRA	7.870e-60	55.22	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A836CAI0_9STRA	4.540e-57	59.26	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0G4H236_9ALVE	4.540e-56	56.17	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A6V1NAG2_HETAK	5.510e-54	57.32	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A0G4ELJ2_VITBC	1.520e-53	54.94	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
F0Y1D8_AURAN	3.260e-46	55.03	Uncharacterized protein LHC9 n=1 Tax=Aureococcus a...	[more]
A0A6S8TCV5_9STRA	1.320e-42	51.55	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A6S8TQ14_9STRA	2.330e-41	50.31	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 44..205 e-value: 1.6E-28 score: 101.6
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..202 e-value: 5.3E-24 score: 85.6
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 27..203
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..211
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.851
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 40..203
None	No IPR available	TMHMM	TMhelix		coord: 137..159
None	No IPR available	TMHMM	TMhelix		coord: 100..122
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig47809	contig	H-elongata_contig47809:1950..2585 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig47809.11916.1	mRNA_H-elongata_contig47809.11916.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig47809 1950..2585 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig47809.11916.1 ID=prot_H-elongata_contig47809.11916.1|Name=mRNA_H-elongata_contig47809.11916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MKSFAVAAASLCVLAPVAAFVPSAPSLVSVRSAPSTTKMASTPERSVAIP
IDPYPEGLDGEMVGDVGFDPAGFANNPPSWVSGEGSGTAARIKWYREAEL
AHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGI
QIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYRE
KQLQVGLRRDA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln