prot_H-elongata_contig47507.11879.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47507.11879.1
Unique Nameprot_H-elongata_contig47507.11879.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
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BLAST of mRNA_H-elongata_contig47507.11879.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.860e-14
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 
Query:   15 EDYIECESCNEWYHFSCEDLDETDPPDVYSCKRC 48
            EDYIECESCNEWYHFSCE LDE +PP+ YSCKRC
Sbjct:  170 EDYIECESCNEWYHFSCEGLDEDNPPERYSCKRC 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47507.11879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF5_ECTSI4.860e-1485.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..48
e-value: 1.1E-10
score: 43.0
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 4..48
e-value: 1.3E-7
score: 31.4
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 14..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47507contigH-elongata_contig47507:3611..3754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47507.11879.1mRNA_H-elongata_contig47507.11879.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47507 3611..3754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47507.11879.1 ID=prot_H-elongata_contig47507.11879.1|Name=mRNA_H-elongata_contig47507.11879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
LSWCKRFLTVAPSSEDYIECESCNEWYHFSCEDLDETDPPDVYSCKRC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD