prot_H-elongata_contig47497.11875.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47497.11875.1
Unique Nameprot_H-elongata_contig47497.11875.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length221
Homology
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BLAST of mRNA_H-elongata_contig47497.11875.1 vs. uniprot
Match: D8LGI2_ECTSI (Histone deacetylase superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-8
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0 
Query:    1 VCGGRVVSILEGGYNLQAIADSAVEHVRALREAAAAAP 38
            VCGGRVVSILEGGYNLQAI+DSAV HV ALR+ AAAAP
Sbjct:  171 VCGGRVVSILEGGYNLQAISDSAVAHVHALRQGAAAAP 208
[Close]
BLAST of mRNA_H-elongata_contig47497.11875.1 vs. uniprot
Match: A0A6H5KT92_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT92_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.700e-7
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 
Query:    1 VCGGRVVSILEGGYNLQAIADSAVEHVRALREAA 34
            VCGGRVVSILEGGYNLQAI+DSAV HV ALR+AA
Sbjct:  385 VCGGRVVSILEGGYNLQAISDSAVAHVHALRQAA 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47497.11875.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGI2_ECTSI1.620e-886.84Histone deacetylase superfamily protein n=1 Tax=Ec... [more]
A0A6H5KT92_9PHAE5.700e-788.24Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037138Histone deacetylase domain superfamilyGENE3D3.40.800.20coord: 1..67
e-value: 3.0E-7
score: 31.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47497contigH-elongata_contig47497:586..1248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47497.11875.1mRNA_H-elongata_contig47497.11875.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47497 586..1701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47497.11875.1 ID=prot_H-elongata_contig47497.11875.1|Name=mRNA_H-elongata_contig47497.11875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
VCGGRVVSILEGGYNLQAIADSAVEHVRALREAAAAAPFLPRSPSASSPD
KGDESLEAAARATELSSAEPLSGGDISNAARPQVEEILGKQTRFGHTVAD
GEGRAHLCDGTGSTSSATTEESALNAAAVAGASEITLAELLFSSSSDVGV
GLSGEGVASGTEELITAEQNLPETFRDCVSPGHSDGVIRVGWGGTSVPDP
KGIEECSDLMAQLGVNDGAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037138His_deacetylse_dom_sf