prot_H-elongata_contig47442.11864.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47442.11864.1
Unique Nameprot_H-elongata_contig47442.11864.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length164
Homology
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 9.400e-71
Identity = 116/151 (76.82%), Postives = 127/151 (84.11%), Query Frame = 0
Query:   13 SGVRPTVSKPFTIDLEAVGVTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDALLGCPLRASADDWDWASFR 163
            +G    VSKPFTIDLE  G+TGFIKA+ F+EGFHEPALALLYEPIQTC GRLAS RSTCRL +LS+NL QGRAPVIW+V +LPHDSWDLV VP PIGG+QVISTNAV+HVN SEV SILAVNGYARATV+ ALL CPLR    DW W SFR
Sbjct:  283 AGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFR 433          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM)

HSP 1 Score: 103 bits (256), Expect = 1.800e-22
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 0
Query:   41 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDAL 145
            F+  F+EP LA+L+EP QT PG+L S + +C L+V+SL + Q   P+I  + +LPH    L+++P P+GGI +IS NA+IHVN S     +AVNGYA +T + +L
Sbjct:  237 FLHDFYEPTLAILFEPCQTWPGKLNSTKDSCSLVVVSLLISQKAYPIIQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDFSL 341          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI000A2A51A4 (cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A51A4)

HSP 1 Score: 102 bits (253), Expect = 4.520e-22
Identity = 45/85 (52.94%), Postives = 65/85 (76.47%), Query Frame = 0
Query:   41 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 125
            F+ G++EP L +LYEPI+T  GRLA  R TC L+ +SLN+ +   PVIW++S LP+DS+ ++AVP PIGG+ V STNA++++N S
Sbjct:  210 FLHGYYEPTLLILYEPIKTWAGRLAMRRDTCALVAVSLNMSERVHPVIWQLSSLPYDSYSVLAVPKPIGGVLVFSTNALLYLNQS 294          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI0009E1A363 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1A363)

HSP 1 Score: 99.8 bits (247), Expect = 2.890e-21
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 0
Query:    8 GASRVSGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 125
            GA   SG R  +   +TI+L+ +   +   I    F+ G++EP L LLYEP+QT PGRLA    TC L+ +SLNL Q   PV+W +++LP D   ++AVP PIGG+ + +TN+++++N S
Sbjct:  182 GAFTGSGDRSPLLPSYTINLKDIHDKLCNIIDVQ-FLHGYYEPTLLLLYEPLQTWPGRLAMRHDTCALVAVSLNLSQRTHPVVWSLNNLPFDCSQVLAVPKPIGGVLICATNSLLYLNQS 300          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI000C05354C (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C05354C)

HSP 1 Score: 98.6 bits (244), Expect = 3.440e-21
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 0
Query:    8 GASRVSGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 125
            G    SG R  +   +TI+L+ +   +   I    F+ G++EP L +LYEP+QT PGRLA    TC L+ +SLNL Q   PV+W +++LP D   ++AVP PIGG+ V +TN+++++N S
Sbjct:  182 GTFTASGDRSPLLPSYTINLKDIHEKLCNIIDIQ-FLHGYYEPTLLILYEPLQTWPGRLAMRHDTCALVAVSLNLSQRTYPVVWSLNNLPFDCSQVLAVPKPIGGVLVCATNSLLYLNQS 300          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI001CF1DE45 (cleavage and polyadenylation specificity factor subunit 1-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF1DE45)

HSP 1 Score: 98.6 bits (244), Expect = 7.310e-21
Identity = 49/115 (42.61%), Postives = 75/115 (65.22%), Query Frame = 0
Query:   13 SGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 125
            SG R  +   +TI+L+ +   +   I    F+ G++EP L LLYEP+QT PGRLA    TC L+ +SLNL Q   PV+W +++LP D   ++AVP PIGG+ + +TN+++++N S
Sbjct:  186 SGDRSPLLPSYTINLKDIHDKLCNIIDVQ-FLHGYYEPTLLLLYEPLQTWPGRLAMRHDTCALIAVSLNLSQRTHPVVWSLNNLPFDCSQVLAVPKPIGGVLICATNSLLYLNQS 299          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A4Y2GB93_ARAVE (Cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GB93_ARAVE)

HSP 1 Score: 97.1 bits (240), Expect = 2.210e-20
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 0
Query:   13 SGVRPTVSKPFTIDLEAVGV-TGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 125
            SGV+  V   +TI    +      +K   F++G++EP L LL+EP++T PGR A    TC +L LSLN+ Q   PVIW VS LP DS   +AVP PIGG+ +++ N+++++N S
Sbjct:  170 SGVKTPVLASYTIKFSDIDEKVNNVKDFQFLQGYYEPTLLLLHEPLRTWPGRTAVRHDTCAILALSLNINQRVHPVIWTVSGLPFDSLYAMAVPKPIGGVLLVAVNSLLYLNQS 283          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: L8GPK4_ACACA (CPSF A subunit region protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPK4_ACACA)

HSP 1 Score: 96.7 bits (239), Expect = 3.440e-20
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 0
Query:   19 VSKPFTIDLEAVGVTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRA-----PVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVN 123
            V   F +DL A+G+   +K  VF++G++EP L +LYEP QT  GR+A  R+TC    +SLNL Q R      PV+W    LP+D+  L+AVP PIGG   +STN+++++N
Sbjct:  204 VKPSFLLDLRAMGIIN-VKDFVFLQGYYEPTLLILYEPTQTWSGRVAVNRNTCVAAAVSLNLWQHRGQTSAHPVVWSAEFLPYDTQRLIAVPGPIGGALALSTNSLLYLN 312          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A1Y1Y6W0_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6W0_9FUNG)

HSP 1 Score: 96.3 bits (238), Expect = 4.680e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 0
Query:   40 VFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYA 137
            +F+E ++EP LA+LYEP+QT    L++ + TC L V+SL+L +   PVI+ +  LP+D   L+ VP PIGGI ++S NA+IHV+ S     +AVNG+A
Sbjct:  204 IFLEDYYEPTLAILYEPVQTNTVLLSTRKDTCALAVVSLDLTKKLYPVIYSIDSLPYDCIKLIPVPKPIGGILIVSANALIHVDQSSPGQGIAVNGHA 301          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A0L0HAP2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAP2_SPIPD)

HSP 1 Score: 95.5 bits (236), Expect = 8.780e-20
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 0
Query:   41 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSIL-AVNGY 136
            F+ GF EP LA+LYEPIQT  GRLA+ + T  L+V+SL++ Q   PV+++V  LP+++  L+ VP P+GG+ V+S NA+IHV+ + V  +  AVN Y
Sbjct:  241 FLYGFFEPTLAILYEPIQTWTGRLAARKDTKSLIVVSLDITQRSYPVLFKVDHLPYNATSLIPVPPPVGGLVVLSPNALIHVDQTSVPGVACAVNSY 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI9.400e-7176.82Cleavage and polyadenylation specificity factor CG... [more]
A0A397HFG4_9GLOM1.800e-2246.67Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
UPI000A2A51A44.520e-2252.94cleavage and polyadenylation specificity factor su... [more]
UPI0009E1A3632.890e-2142.50cleavage and polyadenylation specificity factor su... [more]
UPI000C05354C3.440e-2141.67cleavage and polyadenylation specificity factor su... [more]
UPI001CF1DE457.310e-2142.61cleavage and polyadenylation specificity factor su... [more]
A0A4Y2GB93_ARAVE2.210e-2042.98Cleavage and polyadenylation specificity factor su... [more]
L8GPK4_ACACA3.440e-2044.55CPSF A subunit region protein n=1 Tax=Acanthamoeba... [more]
A0A1Y1Y6W0_9FUNG4.680e-2046.94Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A0L0HAP2_SPIPD8.780e-2048.45Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 6..146
e-value: 9.6E-12
score: 46.1
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 36..136
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 36..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47442contigH-elongata_contig47442:314..1884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47442.11864.1mRNA_H-elongata_contig47442.11864.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47442 314..1884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47442.11864.1 ID=prot_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
GGEAFVIGASRVSGVRPTVSKPFTIDLEAVGVTGFIKASVFMEGFHEPAL
ALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWD
LVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDALLGCPL
RASADDWDWASFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf