prot_H-elongata_contig47272.11836.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig47272.11836.1
Unique Name	prot_H-elongata_contig47272.11836.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	101

Homology

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 4.050e-62
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 101
            MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQPAK  KRMDQQ KKKELE
Sbjct:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELE 101

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 172 bits (437), Expect = 7.370e-54
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 101
            RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQP +  K+MDQ+ +++ELE
Sbjct:   12 RLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELE 111

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.110e-54
Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 101
            RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ ++ QKRMD   K+KELE
Sbjct:   14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELE 113

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.490e-53
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 101
            RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ  K  KR+D+  K++E+E
Sbjct:   11 RLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIE 110

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.740e-53
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 101
            RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVYEDIYDAK AVDHL+GFNVCGRYL+VLYYQ +K Q+R+D Q K++ELE
Sbjct:   16 RLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELE 115

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU)

HSP 1 Score: 171 bits (432), Expect = 5.000e-53
Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 100
            MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ  K QKR+D + ++KEL
Sbjct:   10 MRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKEL 109

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 170 bits (430), Expect = 9.160e-53
Identity = 80/100 (80.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 101
            RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ A+ +KR+D   K++ELE
Sbjct:   12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELE 111

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2JD52_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JD52_9EUKA)

HSP 1 Score: 167 bits (424), Expect = 8.010e-52
Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 100
            RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ QDTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLY+Q  K QKR+D + + KEL
Sbjct:   10 RLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAQDTRGTAFVVYEDIYDAKTAVDHLSGFNVCGRYLVVLYFQQTKMQKRLDTEREMKEL 108

[Close]

BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT)

HSP 1 Score: 167 bits (424), Expect = 8.270e-52
Identity = 79/100 (79.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 100
            +RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ  K QKR+D + +++EL
Sbjct:   16 LRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQREL 115

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BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S4EVP5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVP5_CHRCT)

HSP 1 Score: 167 bits (422), Expect = 1.420e-51
Identity = 79/100 (79.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 100
            +RLPPEVNRA+YVRNLPFKI+ +EMYDIFGK+GAIRQIRLG+  DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ  K QKR+D + +++EL
Sbjct:    9 LRLPPEVNRALYVRNLPFKITTEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEKEQREL 108

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot

BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0W6_ECTSI	4.050e-62	95.05	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6S9GFW4_HETAK	7.370e-54	81.00	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2DAY0_9STRA	8.110e-54	82.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835YN30_9STRA	1.490e-53	83.00	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2S8J7_9STRA	1.740e-53	81.00	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
R1DMS8_EMIHU	5.000e-53	82.00	RRM domain-containing protein n=1 Tax=Emiliania hu...	[more]
A0A7S2C985_9STRA	9.160e-53	80.00	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2JD52_9EUKA	8.010e-52	81.82	Hypothetical protein n=1 Tax=Haptolina brevifila T...	[more]
A0A7S3SDL9_9SPIT	8.270e-52	79.00	Hypothetical protein n=1 Tax=Strombidinopsis acumi...	[more]
A0A7S4EVP5_CHRCT	1.420e-51	79.00	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..80 e-value: 5.3E-14 score: 62.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..77 e-value: 6.9E-15 score: 54.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..84 score: 15.75
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..101 e-value: 2.3E-22 score: 81.1
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6-LIKE PROTEIN	coord: 2..101
None	No IPR available	PANTHER	PTHR12785	splicing factor 3B	coord: 2..101
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..91

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig47272	contig	H-elongata_contig47272:2605..4294 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig47272.11836.1	mRNA_H-elongata_contig47272.11836.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig47272 2605..4294 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig47272.11836.1 ID=prot_H-elongata_contig47272.11836.1|Name=mRNA_H-elongata_contig47272.11836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTA
FVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL
E

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf