prot_H-elongata_contig47242.11834.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47242.11834.1
Unique Nameprot_H-elongata_contig47242.11834.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: A0A6H5KW60_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW60_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.010e-12
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0
Query:    4 GNPLVGFGPTGGEA---LIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGYVAVSKV 56
            G  +VG G  GGEA   L+  L WQVEYYFS +NLVTD+YLRGLMD +G+VAVSK+
Sbjct: 1587 GANVVGGGSDGGEAFEALMAALRWQVEYYFSADNLVTDTYLRGLMDPEGFVAVSKI 1642          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: D7FJX9_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 6.870e-12
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0
Query:    4 GNPLVGFGPTGGEA---LIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGYVAVSKV 56
            G  + G G  GGEA   L+  L WQVEYYFS +NLVTD+YLRGLMD +G+VAVSK+
Sbjct:   43 GANVGGGGSDGGEAFEALMAALRWQVEYYFSADNLVTDAYLRGLMDPEGFVAVSKI 98          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: A0A7S2G044_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G044_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.570e-6
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 0
Query:   16 EALIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGYVAVSKVRK 58
            + L+ +LC Q+EYYFS ENL+ D YLR  MD++GYV ++++ K
Sbjct:  211 DILLLSLCHQIEYYFSAENLIRDVYLRSKMDMNGYVLLTEIAK 253          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: UPI001C4EFCC7 (la-related protein 1C-like isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4EFCC7)

HSP 1 Score: 50.1 bits (118), Expect = 2.450e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    5 NPLVGFGPTGGEALIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGYVAV 53
            NP VG        L  T+ +Q+EYYFS+ENLV D+YL+ LMD +G+V++
Sbjct:  355 NPEVG--------LCNTILYQIEYYFSKENLVKDAYLKSLMDNEGWVSI 395          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: UPI00053A0E1E (la-related protein 1C n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A0E1E)

HSP 1 Score: 49.3 bits (116), Expect = 4.600e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0
Query:   25 QVEYYFSEENLVTDSYLRGLMDVDGYVAV------SKVRKLWNALQ 64
            Q++YYFSEENL+TD YLRG MD +G+V +       KV +L +++Q
Sbjct:  386 QIQYYFSEENLITDLYLRGFMDEEGFVPLRVIAGFKKVAELTDSIQ 431          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: A0A6J1BZT7_MOMCH (la-related protein 1C-like n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1BZT7_MOMCH)

HSP 1 Score: 48.5 bits (114), Expect = 8.620e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   17 ALIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGYVAVS------KVRKLWNALQ 64
            +L  ++  Q+EYYFS++NL+TD++LR  MD  G+V +S      +V+KL N +Q
Sbjct:  379 SLSASIVQQIEYYFSDDNLITDTFLRSWMDDQGWVPISLIAAFPRVKKLTNNIQ 432          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: A0A830CGF4_9LAMI (La-related protein 1a n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CGF4_9LAMI)

HSP 1 Score: 48.5 bits (114), Expect = 8.690e-5
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 0
Query:    5 NPLVGFGPTGGEALIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGYVAVSKVR--KLWNALQPPRPFVL 71
            +P V   P+   AL   +  Q+EYYFS++NL TD YLR LMD  G++ +S +   K    +    PF+L
Sbjct:   78 SPGVHMPPSPMLALRANIVKQIEYYFSDQNLETDPYLRSLMDSQGWIPISTIADFKRVKRMNADIPFIL 146          
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Match: A0A4D9AIX5_SALSN (La-related protein 1 n=6 Tax=Salvia TaxID=21880 RepID=A0A4D9AIX5_SALSN)

HSP 1 Score: 48.5 bits (114), Expect = 8.780e-5
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0
Query:    5 NPLVGFGPTGGEALIGTLCWQVEYYFSEENLVTDS-YLRGLMDVDGYVAVSKVRK 58
            +P V   PT  EAL  ++  Q+EYYFS+ENLV+D  YL  LMD  G+V VS + K
Sbjct:  294 SPGVPISPTPLEALRTSIVKQIEYYFSDENLVSDDVYLISLMDHHGWVPVSSIAK 348          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47242.11834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KW60_9PHAE3.010e-1264.29HTH La-type RNA-binding domain-containing protein ... [more]
D7FJX9_ECTSI6.870e-1262.50HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S2G044_9STRA3.570e-651.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001C4EFCC72.450e-548.98la-related protein 1C-like isoform X1 n=2 Tax=Maca... [more]
UPI00053A0E1E4.600e-550.00la-related protein 1C n=3 Tax=Camelina sativa TaxI... [more]
A0A6J1BZT7_MOMCH8.620e-542.59la-related protein 1C-like n=1 Tax=Momordica chara... [more]
A0A830CGF4_9LAMI8.690e-539.13La-related protein 1a n=1 Tax=Phtheirospermum japo... [more]
A0A4D9AIX5_SALSN8.780e-550.91La-related protein 1 n=6 Tax=Salvia TaxID=21880 Re... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 16..68
e-value: 8.9E-4
score: 3.5
IPR006630La-type HTH domainPFAMPF05383Lacoord: 23..56
e-value: 5.2E-12
score: 45.6
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 12..71
score: 11.394
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 12..62
e-value: 3.8E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR22792:SF119PROTEIN SLF1-RELATEDcoord: 16..59
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 16..59
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 18..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47242contigH-elongata_contig47242:4066..4278 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47242.11834.1mRNA_H-elongata_contig47242.11834.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47242 4066..4278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47242.11834.1 ID=prot_H-elongata_contig47242.11834.1|Name=mRNA_H-elongata_contig47242.11834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MYGGNPLVGFGPTGGEALIGTLCWQVEYYFSEENLVTDSYLRGLMDVDGY
VAVSKVRKLWNALQPPRPFVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf